CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003623m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10003623m.g
T286240_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G04760
M02304_2.00
Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN
PBM
Weirauch et al.(2014)
pTH7079
0.896
0.989
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003623m
Myb
3
51
SSQWTRSEDKMFEQALVLFPEGSPNRWERIADQLHKSAGEVREHYEALV
Carubv10003623m
Myb
97
144
GTPWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy