Carubv10006317m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10006317m.g T286258_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006317m Myb 229 279

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.13129s0247 Boechera stricta Bostr.13129s0247 N 0.877
Carubv10003421m.g Capsella rubella Carubv10003421m.g N 0.877
ARR21 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000557 N 0.877
Bo9g175250 Brassica oleracea Bo9g175250 N 0.869
Bra009284 Brassica rapa Bra009284 N 0.869
Thhalv10016040m.g Eutrema salsugineum Thhalv10016040m.g N 0.838
ARR21 Arabidopsis thaliana AT5G07210 N 0.807
Carubv10007858m.g Capsella rubella Carubv10007858m.g N 0.807
Bra028705 Brassica rapa Bra028705 N 0.799
Bo2g007540 Brassica oleracea Bo2g007540 N 0.799
Bra005928 Brassica rapa Bra005928 N 0.781
cassava21270.m1 Manihot esculenta cassava21270.m1 N 0.767
Cagra.6496s0001 Capsella grandiflora Cagra.6496s0001 N 0.758
orange1.1g043479m.g Citrus sinensis orange1.1g043479m.g N 0.756
Ciclev10006834m.g Citrus clementina Ciclev10006834m.g N 0.756
PRUPE_ppa023185mg Prunus persica PRUPE_ppa023185mg N 0.737
30147.m014309 Ricinus communis 30147.m014309 N 0.737
gene13325-v1.0-hybrid Fragaria vesca gene13325-v1.0-hybrid N 0.737
Bo3g004250 Brassica oleracea Bo3g004250 N 0.727
Ciclev10006586m.g Citrus clementina Ciclev10006586m.g N 0.722
orange1.1g040406m.g Citrus sinensis orange1.1g040406m.g N 0.722
Ca_20899 Cicer arietinum Ca_20899 I 0.708
TRIUR3_30130 Triticum urartu TRIUR3_30130 I 0.708
cassava35050.m1 Manihot esculenta cassava35050.m1 N 0.700
POPTR_0015s13860 Populus trichocarpa POPTR_0015s13860 I 0.695
mgf019327m Mimulus guttatus mgf019327m N 0.693
GSMUA_Achr10G23650_001 Musa acuminata GSMUA_Achr10G23650_001 N 0.690
F775_03134 Aegilops tauschii F775_03134 I 0.687
F775_03846 Aegilops tauschii F775_03846 I 0.687
TRIUR3_20429 Triticum urartu TRIUR3_20429 I 0.687
TRIUR3_25232 Triticum urartu TRIUR3_25232 I 0.687
ARR13 Arabidopsis thaliana AT2G27070 N 0.683
MDP0000228719 Malus domestica MDP0000228719 N 0.677
POPTR_0012s13900 Populus trichocarpa POPTR_0012s13900 N 0.676
cassava37074.valid.m1 Manihot esculenta cassava37074.valid.m1 I 0.670
cassava37075.valid.m1 Manihot esculenta cassava37075.valid.m1 I 0.670
Gorai.001G030600 Gossypium raimondii Gorai.001G030600 I 0.670
Cla006313 Citrullus lanatus Cla006313 N 0.662
Cucsa.251000 Cucumis sativus Cucsa.251000 N 0.662