CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10007254m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10007254m.g
T286271_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.867
0.978
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.839
0.935
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT
ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.780
0.870
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.780
0.870
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY
RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.780
0.870
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.685
0.761
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.685
0.761
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.678
0.761
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.678
0.761
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10007254m
Myb
22
69
KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL
Carubv10007254m
Myb
75
119
RGNITAEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTK
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
333 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30076.m004659
Ricinus communis
30076.m004659
I
0.000
30131.m007078
Ricinus communis
30131.m007078
I
0.000
AMTR_s00014p00097990
Amborella trichopoda
AMTR_s00014p00097990
N
0.000
Bostr.7867s1634
Boechera stricta
Bostr.7867s1634
N
0.000
Bra039631
Brassica rapa
Bra039631
I
0.000
cassava1498.valid.m1
Manihot esculenta
cassava1498.valid.m1
N
0.000
cassava24775.valid.m1
Manihot esculenta
cassava24775.valid.m1
I
0.000
cassava40461.m1
Manihot esculenta
cassava40461.m1
I
0.000
cassava42526.valid.m1
Manihot esculenta
cassava42526.valid.m1
N
0.000
Ciclev10002731m.g
Citrus clementina
Ciclev10002731m.g
N
0.000
Ciclev10029834m.g
Citrus clementina
Ciclev10029834m.g
I
0.000
Cla014262
Citrullus lanatus
Cla014262
N
0.000
Cla016841
Citrullus lanatus
Cla016841
I
0.000
Cla022814
Citrullus lanatus
Cla022814
N
0.000
Cucsa.043170
Cucumis sativus
Cucsa.043170
N
0.000
Cucsa.103380
Cucumis sativus
Cucsa.103380
N
0.000
Cucsa.109420
Cucumis sativus
Cucsa.109420
I
0.000
Cucsa.248080
Cucumis sativus
Cucsa.248080
N
0.000
Eucgr.F01867
Eucalyptus grandis
Eucgr.F01867
N
0.000
Eucgr.G01645
Eucalyptus grandis
Eucgr.G01645
N
0.000
Eucgr.H01022
Eucalyptus grandis
Eucgr.H01022
N
0.000
Eucgr.L01254
Eucalyptus grandis
Eucgr.L01254
N
0.000
Eucgr.L01789
Eucalyptus grandis
Eucgr.L01789
N
0.000
evm.TU.supercontig_538.1
Carica papaya
evm.TU.supercontig_538.1
I
0.000
evm.TU.supercontig_6.175
Carica papaya
evm.TU.supercontig_6.175
N
0.000
gene02284-v1.0-hybrid
Fragaria vesca
gene02284-v1.0-hybrid
N
0.000
gene21832-v1.0-hybrid
Fragaria vesca
gene21832-v1.0-hybrid
I
0.000
GLYMA02G01600
Glycine max
GLYMA02G01600
N
0.000
GLYMA10G01640
Glycine max
GLYMA10G01640
N
0.000
GLYMA11G12240
Glycine max
GLYMA11G12240
I
0.000
GLYMA12G04440
Glycine max
GLYMA12G04440
I
0.000
Gorai.001G144200
Gossypium raimondii
Gorai.001G144200
I
0.000
Gorai.002G126500
Gossypium raimondii
Gorai.002G126500
I
0.000
Gorai.007G122800
Gossypium raimondii
Gorai.007G122800
I
0.000
Gorai.008G065300
Gossypium raimondii
Gorai.008G065300
I
0.000
GSMUA_Achr11G05140_001
Musa acuminata
GSMUA_Achr11G05140_001
I
0.000
GSMUA_Achr1G12710_001
Musa acuminata
GSMUA_Achr1G12710_001
I
0.000
GSMUA_Achr4G03790_001
Musa acuminata
GSMUA_Achr4G03790_001
I
0.000
Lus10001347.g
Linum usitatissimum
Lus10001347.g
N
0.000
Lus10010005.g
Linum usitatissimum
Lus10010005.g
I
0.000
Lus10024279.g
Linum usitatissimum
Lus10024279.g
N
0.000
Lus10025024.g
Linum usitatissimum
Lus10025024.g
I
0.000
MDP0000205823
Malus domestica
MDP0000205823
I
0.000
MDP0000239026
Malus domestica
MDP0000239026
I
0.000
mgf018581m
Mimulus guttatus
mgf018581m
I
0.000
orange1.1g041765m.g
Citrus sinensis
orange1.1g041765m.g
N
0.000
orange1.1g044691m.g
Citrus sinensis
orange1.1g044691m.g
I
0.000
PGSC0003DMG400003701
Solanum tuberosum
PGSC0003DMG400003701
I
0.000
PGSC0003DMG400030946
Solanum tuberosum
PGSC0003DMG400030946
I
0.000
PK06492.1
Cannabis sativa
PK06492.1
N
0.000
PK07533.1
Cannabis sativa
PK07533.1
I
0.000
POPTR_0002s19720
Populus trichocarpa
POPTR_0002s19720
I
0.000
POPTR_0004s16560
Populus trichocarpa
POPTR_0004s16560
I
0.000
POPTR_0009s12250
Populus trichocarpa
POPTR_0009s12250
I
0.000
SapurV1A.0158s0220
Salix purpurea
SapurV1A.0158s0220
I
0.000
SapurV1A.3521s0020
Salix purpurea
SapurV1A.3521s0020
I
0.000
Sb07g015450
Sorghum bicolor
Sb07g015450
N
0.000
Si014523m.g
Setaria italica
Si014523m.g
N
0.000
VIT_03s0038g04450
Vitis vinifera
VIT_03s0038g04450
I
0.000
VIT_07s0005g01450
Vitis vinifera
VIT_07s0005g01450
N
0.000