Carubv10007254m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10007254m.g T286271_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN

NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.867 0.978
MYB05_ANTMA
M11067_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.839 0.935
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT

ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.780 0.870
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH

DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.780 0.870
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY

RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.780 0.870
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.685 0.761
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.685 0.761
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN

NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.678 0.761
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH

DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.678 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007254m Myb 22 69
Carubv10007254m Myb 75 119

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30076.m004659 Ricinus communis 30076.m004659 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
AMTR_s00014p00097990 Amborella trichopoda AMTR_s00014p00097990 N 0.000
Bostr.7867s1634 Boechera stricta Bostr.7867s1634 N 0.000
Bra039631 Brassica rapa Bra039631 I 0.000
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
cassava40461.m1 Manihot esculenta cassava40461.m1 I 0.000
cassava42526.valid.m1 Manihot esculenta cassava42526.valid.m1 N 0.000
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N 0.000
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I 0.000
Cla014262 Citrullus lanatus Cla014262 N 0.000
Cla016841 Citrullus lanatus Cla016841 I 0.000
Cla022814 Citrullus lanatus Cla022814 N 0.000
Cucsa.043170 Cucumis sativus Cucsa.043170 N 0.000
Cucsa.103380 Cucumis sativus Cucsa.103380 N 0.000
Cucsa.109420 Cucumis sativus Cucsa.109420 I 0.000
Cucsa.248080 Cucumis sativus Cucsa.248080 N 0.000
Eucgr.F01867 Eucalyptus grandis Eucgr.F01867 N 0.000
Eucgr.G01645 Eucalyptus grandis Eucgr.G01645 N 0.000
Eucgr.H01022 Eucalyptus grandis Eucgr.H01022 N 0.000
Eucgr.L01254 Eucalyptus grandis Eucgr.L01254 N 0.000
Eucgr.L01789 Eucalyptus grandis Eucgr.L01789 N 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
evm.TU.supercontig_6.175 Carica papaya evm.TU.supercontig_6.175 N 0.000
gene02284-v1.0-hybrid Fragaria vesca gene02284-v1.0-hybrid N 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
GLYMA02G01600 Glycine max GLYMA02G01600 N 0.000
GLYMA10G01640 Glycine max GLYMA10G01640 N 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I 0.000
Gorai.002G126500 Gossypium raimondii Gorai.002G126500 I 0.000
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I 0.000
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
Lus10001347.g Linum usitatissimum Lus10001347.g N 0.000
Lus10010005.g Linum usitatissimum Lus10010005.g I 0.000
Lus10024279.g Linum usitatissimum Lus10024279.g N 0.000
Lus10025024.g Linum usitatissimum Lus10025024.g I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N 0.000
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I 0.000
PGSC0003DMG400003701 Solanum tuberosum PGSC0003DMG400003701 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
PK06492.1 Cannabis sativa PK06492.1 N 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I 0.000
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I 0.000
Sb07g015450 Sorghum bicolor Sb07g015450 N 0.000
Si014523m.g Setaria italica Si014523m.g N 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000
VIT_07s0005g01450 Vitis vinifera VIT_07s0005g01450 N 0.000