Carubv10009890m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10009890m.g T286295_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.837 0.915
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.837 0.915
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.786 0.766
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.710 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009890m Myb 5 57
Carubv10009916m Myb 5 57
Carubv10009919m Myb 5 57

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.898
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.898
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.870
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.870
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.861
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.860
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.858
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.858
29706.m001328 Ricinus communis 29706.m001328 I 0.850
TCM_029078 Theobroma cacao TCM_029078 I 0.850
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.850
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.837
Bo8g067280 Brassica oleracea Bo8g067280 I 0.835
Bra016598 Brassica rapa Bra016598 I 0.835
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.831
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.831
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.828
Bo8g104830 Brassica oleracea Bo8g104830 I 0.825
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.814
Bra025967 Brassica rapa Bra025967 I 0.806
Bo5g023860 Brassica oleracea Bo5g023860 I 0.806
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.802
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.802
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.802
Pm013309 Prunus mume Pm013309 I 0.801
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.801
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.798
Cla012798 Citrullus lanatus Cla012798 I 0.798
Bra030992 Brassica rapa Bra030992 I 0.797
Bra016037 Brassica rapa Bra016037 I 0.787
Bo6g116150 Brassica oleracea Bo6g116150 I 0.787
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.786
OB01G37330 Oryza brachyantha OB01G37330 I 0.786
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.786
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.786
OBART01G28260 Oryza barthii OBART01G28260 I 0.786
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.786
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.786
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.786
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.786
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.786
OS01G0708000 Oryza sativa OS01G0708000 D 0.786
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.774
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.770
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.770
Bra030894 Brassica rapa Bra030894 I 0.765
Bo3g184590 Brassica oleracea Bo3g184590 I 0.765
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.759
mgf009594m Mimulus guttatus mgf009594m I 0.750
TCM_042744 Theobroma cacao TCM_042744 I 0.743
mgf007122m Mimulus guttatus mgf007122m I 0.733
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.728
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.725
Ca_02722 Cicer arietinum Ca_02722 I 0.725
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.725
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.725
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.725
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.725
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.725
MTR_8g018410 Medicago truncatula MTR_8g018410 I 0.722
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.719
29912.m005376 Ricinus communis 29912.m005376 I 0.717
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.716
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.716
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.716
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.715
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.715
Si002403m.g Setaria italica Si002403m.g I 0.715
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.715
Ca_10058 Cicer arietinum Ca_10058 I 0.711
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.710
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.710
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.710
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.710
Bo5g077530 Brassica oleracea Bo5g077530 I 0.710
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.710
TRB1 Arabidopsis thaliana AT1G49950 D 0.710
Bo6g018740 Brassica oleracea Bo6g018740 I 0.710
Bra018818 Brassica rapa Bra018818 I 0.710
Bra039650 Brassica rapa Bra039650 I 0.710
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.710
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.710
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.705
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.705
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.705
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.705
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.705
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.705
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.704
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.704
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.704
PK00568.1 Cannabis sativa PK00568.1 I 0.703
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.701
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.700
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.699
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.698
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.698
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.697
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.697
Si002467m.g Setaria italica Si002467m.g I 0.697
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.697
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.697
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.697
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.696
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.696
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.696
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.696
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.696
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.695
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.695
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.691
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.691
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.691
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.691
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.690
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.689
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.689
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.683
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.683
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.683
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.683
Pm027209 Prunus mume Pm027209 I 0.683
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.683
MDP0000265359 Malus domestica MDP0000265359 I 0.683
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.683
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.683
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.683
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.683
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.679
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.679
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.679
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.679
mgf011386m Mimulus guttatus mgf011386m I 0.676
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.675
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.670
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.670