CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10010045m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10010045m.g
T286297_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10010045m
Myb
14
61
RGEWTAEEDQKLVAYINEHGICDWRSLPIRAGLHRYGKSCRLRWLNYL
Carubv10010045m
Myb
67
112
RGKFTPQEEEDIINFHAVLGNRWAAIAKLMPNRTDNDIKNHWNSCL
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AtMYB47
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1001691
N
0.837
Bostr.7128s0480
Boechera stricta
Bostr.7128s0480
N
0.793
Bo8g091080
Brassica oleracea
Bo8g091080
N
0.774
Thhalv10008528m.g
Eutrema salsugineum
Thhalv10008528m.g
N
0.772
Bra025678
Brassica rapa
Bra025678
N
0.768
Bo5g025730
Brassica oleracea
Bo5g025730
N
0.768
AtMYB47
Arabidopsis thaliana
AT1G18710
N
0.765
Carubv10011014m.g
Capsella rubella
Carubv10011014m.g
N
0.765
Bra015911
Brassica rapa
Bra015911
N
0.763
Bra003801
Brassica rapa
Bra003801
N
0.763
Bo6g118730
Brassica oleracea
Bo6g118730
N
0.763
Thhalv10018987m.g
Eutrema salsugineum
Thhalv10018987m.g
N
0.763
fgenesh1_pg.C_scaffold_1001692
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1001692
N
0.761
Bra016546
Brassica rapa
Bra016546
N
0.756
Bo6g087030
Brassica oleracea
Bo6g087030
N
0.754
Bo5g025790
Brassica oleracea
Bo5g025790
N
0.753
Carubv10010086m.g
Capsella rubella
Carubv10010086m.g
N
0.746
Bra015912
Brassica rapa
Bra015912
N
0.745
Bo6g118710
Brassica oleracea
Bo6g118710
N
0.745
Cagra.4153s0008
Capsella grandiflora
Cagra.4153s0008
N
0.743
Bostr.7128s0481
Boechera stricta
Bostr.7128s0481
N
0.740
Bo8g091100
Brassica oleracea
Bo8g091100
N
0.736
Bo8g068030
Brassica oleracea
Bo8g068030
N
0.731
Bo2g081100
Brassica oleracea
Bo2g081100
N
0.723
Bra008149
Brassica rapa
Bra008149
N
0.720
MYB95
Arabidopsis thaliana
AT1G74430
N
0.687
Cagra.4153s0009
Capsella grandiflora
Cagra.4153s0009
N
0.677
MYB95
Arabidopsis lyrata
fgenesh2_kg.2__1707__AT1G74430.1
N
0.672
Bostr.3288s0088
Boechera stricta
Bostr.3288s0088
N
0.670