Carubv10011382m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10011382m.g T286309_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011382m Myb 35 77

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.909
ETC1 Arabidopsis thaliana AT1G01380 N 0.909
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.909
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.909
30169.m006531 Ricinus communis 30169.m006531 N 0.840
Thhalv10009233m.g Eutrema salsugineum Thhalv10009233m.g N 0.833
Bra032635 Brassica rapa Bra032635 N 0.828
Bo8g117860 Brassica oleracea Bo8g117860 N 0.828
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.813
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.813
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.813
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.813
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.792
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.791
TCM_015351 Theobroma cacao TCM_015351 N 0.784
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.749
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.746
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.746
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.746
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.746
Eucgr.K00332 Eucalyptus grandis Eucgr.K00332 N 0.735
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N 0.727
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.725
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.724
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.724
mgf009009m Mimulus guttatus mgf009009m N 0.722
PK11198.1 Cannabis sativa PK11198.1 N 0.712
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.709
Pm018400 Prunus mume Pm018400 N 0.709
MDP0000141474 Malus domestica MDP0000141474 N 0.709
Bra008539 Brassica rapa Bra008539 N 0.705
Bo2g098940 Brassica oleracea Bo2g098940 N 0.705
Pm009748 Prunus mume Pm009748 N 0.704
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.704
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N 0.704
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.704
MDP0000499190 Malus domestica MDP0000499190 N 0.704
MDP0000270078 Malus domestica MDP0000270078 N 0.704
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.704
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N 0.704
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.704
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.703
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.703
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.703
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.703
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.703
Ca_15029 Cicer arietinum Ca_15029 N 0.703
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.703
TCM_005177 Theobroma cacao TCM_005177 N 0.703
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.703
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.702
MDP0000583070 Malus domestica MDP0000583070 N 0.700
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.700
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.699
ETC3 Arabidopsis thaliana AT4G01060 N 0.699
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.696
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.695
Bra037388 Brassica rapa Bra037388 N 0.692
Bo9g003750 Brassica oleracea Bo9g003750 N 0.692
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.690
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.690
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.690
cassava11157.m1 Manihot esculenta cassava11157.m1 N 0.689
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.688
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N 0.686
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.686
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.684
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.684
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.683
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.683
Bra026297 Brassica rapa Bra026297 N 0.683
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.683
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N 0.682
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.682
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N 0.682
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.682
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.682
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.682
TCM_011327 Theobroma cacao TCM_011327 N 0.682
29842.m003592 Ricinus communis 29842.m003592 N 0.682
30086.m000210 Ricinus communis 30086.m000210 N 0.682
TCM_046858 Theobroma cacao TCM_046858 N 0.682
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.682
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.681
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N 0.680
MDP0000387366 Malus domestica MDP0000387366 N 0.680
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N 0.680
MDP0000216918 Malus domestica MDP0000216918 N 0.680
Bra000941 Brassica rapa Bra000941 N 0.678
Bo3g054440 Brassica oleracea Bo3g054440 N 0.678
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.676
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.674
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N 0.674
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.672
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.670
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.668
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.668
TCM_016428 Theobroma cacao TCM_016428 N 0.668
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N 0.664
TCM_030163 Theobroma cacao TCM_030163 N 0.663
Bo3g022870 Brassica oleracea Bo3g022870 N 0.662
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.661
GLYMA06G45941 Glycine max GLYMA06G45941 N 0.661
MTR_4g046737 Medicago truncatula MTR_4g046737 N 0.661
GLYMA12G10790 Glycine max GLYMA12G10790 N 0.661