Carubv10013882m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10013882m.g T286331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.840 0.882
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.805 0.860
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.713 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013882m Myb 49 95
Carubv10013882m Myb 101 146

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.909
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.870
MYB1 Arabidopsis thaliana AT3G09230 D 0.840
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.831
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.826
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.826
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.825
PK07741.1 Cannabis sativa PK07741.1 D 0.805
Bo3g062160 Brassica oleracea Bo3g062160 I 0.796
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.786
MDP0000284922 Malus domestica MDP0000284922 I 0.786
TCM_042629 Theobroma cacao TCM_042629 I 0.786
Pm018862 Prunus mume Pm018862 I 0.785
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.783
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.781
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.779
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.776
MDP0000807341 Malus domestica MDP0000807341 I 0.769
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.767
Si001686m.g Setaria italica Si001686m.g I 0.766
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.764
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.758
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.756
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.756
MDP0000478512 Malus domestica MDP0000478512 I 0.756
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.756
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.754
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.754
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.754
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.754
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.753
Bra001323 Brassica rapa Bra001323 I 0.752
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.751
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.749
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.749
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.746
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.746
mgf018580m Mimulus guttatus mgf018580m I 0.742
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.742
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.741
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.738
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.735
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.735
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.733
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.733
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.733
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.733
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.731
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.731
MDP0000203733 Malus domestica MDP0000203733 I 0.729
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.729
MDP0000319124 Malus domestica MDP0000319124 I 0.729
TCM_021796 Theobroma cacao TCM_021796 I 0.726
Bo7g117880 Brassica oleracea Bo7g117880 I 0.724
Bra034057 Brassica rapa Bra034057 I 0.724
Bra007186 Brassica rapa Bra007186 I 0.721
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.721
Bo8g090160 Brassica oleracea Bo8g090160 I 0.721
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.721
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.718
Pm002576 Prunus mume Pm002576 I 0.717
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.717
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.716
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.715
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.715
PK12959.1 Cannabis sativa PK12959.1 I 0.715
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.714
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.714
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.713
Si017917m.g Setaria italica Si017917m.g I 0.713
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.713
OS02G0187700 Oryza sativa OS02G0187700 D 0.713
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.713
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.713
Bo1g144680 Brassica oleracea Bo1g144680 I 0.713
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.713
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.713
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.713
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.713
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.713
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.713
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.713
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.713
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.713
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.712
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.711
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.711
mgf015566m Mimulus guttatus mgf015566m I 0.710
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.708
estExt_fgenesh4_pg.C_10375 Volvox carteri estExt_fgenesh4_pg.C_10375 I 0.707
Cla018417 Citrullus lanatus Cla018417 I 0.705
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.705
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.705
27798.m000612 Ricinus communis 27798.m000612 I 0.705
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.704
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.704
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.704
PK16550.1 Cannabis sativa PK16550.1 I 0.703
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.700
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.698
Si032789m.g Setaria italica Si032789m.g I 0.695
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.695
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.695
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.695
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.694
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.694
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.694
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.694
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.693
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.692
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.692
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.691
OS09G0106700 Oryza sativa OS09G0106700 I 0.691
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.691
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.691
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.691
OBART09G00310 Oryza barthii OBART09G00310 I 0.691
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.691
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.691
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.691
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.691
OB09G10200 Oryza brachyantha OB09G10200 I 0.691
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.691
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.691
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.691
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.690
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.688
OS01G0850400 Oryza sativa OS01G0850400 I 0.687
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.687
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.687
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.687
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.687
OBART01G37390 Oryza barthii OBART01G37390 I 0.687
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.687
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.687
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.687
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.687
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.686
Cla013306 Citrullus lanatus Cla013306 I 0.686
Pm021211 Prunus mume Pm021211 I 0.686
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.685
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.685
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.685
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.685
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.684
29801.m003096 Ricinus communis 29801.m003096 I 0.684
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.684
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.679
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.679
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.679
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.679
Si006938m.g Setaria italica Si006938m.g I 0.679
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.679
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.679
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.679
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.678
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.678
TRIUR3_08319 Triticum urartu TRIUR3_08319 I 0.676
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I 0.676
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.676
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.675
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.675
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.674
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.674
Cla022947 Citrullus lanatus Cla022947 I 0.674
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.674
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.673
mgf025567m Mimulus guttatus mgf025567m I 0.673
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.672
MYB109 Arabidopsis thaliana AT3G55730 I 0.671
mgf006151m Mimulus guttatus mgf006151m I 0.671
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.671
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.671
mgf023922m Mimulus guttatus mgf023922m I 0.671
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.671
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.669
Ca_12468 Cicer arietinum Ca_12468 I 0.669
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.667
F775_09670 Aegilops tauschii F775_09670 I 0.666
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.666
Bra005006 Brassica rapa Bra005006 I 0.665
MDP0000187872 Malus domestica MDP0000187872 I 0.665
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.664
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.663
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.663
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.663
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.662