Carubv10017119m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10017119m.g T286362_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH

DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.838 0.945
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN

NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.838 0.945
MYB88
M11038_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.838 0.945
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN

NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.773 0.890
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017119m Myb 34 79
Carubv10017119m Myb 85 129

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.668
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.704
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.838
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.748
MYB88 Arabidopsis thaliana AT2G02820 D 0.838
MYB124 Arabidopsis thaliana AT1G14350 D 0.773
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.888
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.757
Bo2g136560 Brassica oleracea Bo2g136560 I 0.833
Bo7g080730 Brassica oleracea Bo7g080730 I 0.763
Bo5g019500 Brassica oleracea Bo5g019500 I 0.790
Bra024804 Brassica rapa Bra024804 I 0.794
Bra019658 Brassica rapa Bra019658 I 0.790
PK05123.1 Cannabis sativa PK05123.1 I 0.759
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.757
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.909
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.757
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.751
Ca_18779 Cicer arietinum Ca_18779 I 0.759
Cla010333 Citrullus lanatus Cla010333 I 0.755
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.752
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.752
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.755
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.763
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.717
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.790
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.841
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.742
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.789
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.742
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.789
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.751
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.755
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.743
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.743
MDP0000165523 Malus domestica MDP0000165523 I 0.759
MDP0000210970 Malus domestica MDP0000210970 I 0.743
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.759
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.759
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.748
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.759
mgf009409m Mimulus guttatus mgf009409m I 0.773
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.688
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I 0.668
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.759
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.759
Pm006532 Prunus mume Pm006532 I 0.781
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.781
29736.m002013 Ricinus communis 29736.m002013 I 0.770
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.759
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.759
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.729
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.729
TCM_011776 Theobroma cacao TCM_011776 I 0.759
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.677
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.734