Carubv10017397m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10017397m.g T286364_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.802 0.849
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.742 0.796
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.676 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017397m Myb 54 100
Carubv10017397m Myb 106 151

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.909
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.859
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.845
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.845
Bo8g090160 Brassica oleracea Bo8g090160 I 0.836
TCM_042629 Theobroma cacao TCM_042629 I 0.836
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.836
Bra007186 Brassica rapa Bra007186 I 0.827
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.826
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.811
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.811
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.811
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.809
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.807
MYB109 Arabidopsis thaliana AT3G55730 I 0.806
PK07741.1 Cannabis sativa PK07741.1 D 0.802
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.800
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.796
PK12959.1 Cannabis sativa PK12959.1 I 0.795
Pm018862 Prunus mume Pm018862 I 0.792
Si001686m.g Setaria italica Si001686m.g I 0.792
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.791
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.789
MDP0000478512 Malus domestica MDP0000478512 I 0.789
mgf018580m Mimulus guttatus mgf018580m I 0.786
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.784
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.782
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.782
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.781
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.778
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.778
MDP0000284922 Malus domestica MDP0000284922 I 0.778
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.776
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.776
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.776
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.774
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.774
Pm002576 Prunus mume Pm002576 I 0.773
MDP0000203733 Malus domestica MDP0000203733 I 0.773
MDP0000319124 Malus domestica MDP0000319124 I 0.773
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.773
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.768
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.768
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.768
mgf015566m Mimulus guttatus mgf015566m I 0.767
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.765
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.764
TCM_021796 Theobroma cacao TCM_021796 I 0.764
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.762
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.762
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.759
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.758
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.757
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.757
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.756
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.756
MDP0000807341 Malus domestica MDP0000807341 I 0.755
Cla018417 Citrullus lanatus Cla018417 I 0.754
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.754
27798.m000612 Ricinus communis 27798.m000612 I 0.754
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.754
Bo3g062160 Brassica oleracea Bo3g062160 I 0.751
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.746
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.746
Bra005006 Brassica rapa Bra005006 I 0.746
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.746
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.743
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.743
MYB1 Arabidopsis thaliana AT3G09230 D 0.742
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.742
Bo4g025810 Brassica oleracea Bo4g025810 I 0.741
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.735
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.734
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.734
OBART01G37390 Oryza barthii OBART01G37390 I 0.731
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.731
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.731
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.731
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.731
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.731
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.731
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.731
OS01G0850400 Oryza sativa OS01G0850400 I 0.731
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.731
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.731
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.728
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.724
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.724
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.717
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.715
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.713
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.712
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.712
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.710
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.710
Bra001323 Brassica rapa Bra001323 I 0.706
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.705
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.705
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.705
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.705
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.704
Si032789m.g Setaria italica Si032789m.g I 0.704
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.704
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.704
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.702
OB01G46120 Oryza brachyantha OB01G46120 I 0.701
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.700
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.700
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.700
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.700
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.699
TRIUR3_08319 Triticum urartu TRIUR3_08319 I 0.699
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.696
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.694
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.690
Bra034057 Brassica rapa Bra034057 I 0.687
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.685
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.683
PK16550.1 Cannabis sativa PK16550.1 I 0.683
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.683
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.680
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.680
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.680
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.680
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.680
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.680
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.680
OB09G10200 Oryza brachyantha OB09G10200 I 0.680
OBART09G00310 Oryza barthii OBART09G00310 I 0.680
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.680
OS09G0106700 Oryza sativa OS09G0106700 I 0.680
mgf025567m Mimulus guttatus mgf025567m I 0.679
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.678
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.678
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.678
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.678
MYB25 Arabidopsis thaliana AT2G39880 I 0.678
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.676
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.676
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.676
Bo1g144680 Brassica oleracea Bo1g144680 I 0.676
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.676
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.676
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.676
Si017917m.g Setaria italica Si017917m.g I 0.676
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.676
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.676
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.676
OS02G0187700 Oryza sativa OS02G0187700 D 0.676
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.676
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.676
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.676
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.676
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.674
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.674
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.674
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.673
F775_09670 Aegilops tauschii F775_09670 I 0.673
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.673
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.673
29801.m003096 Ricinus communis 29801.m003096 I 0.673
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.672
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.671
Bo7g118450 Brassica oleracea Bo7g118450 I 0.671
Ca_02182 Cicer arietinum Ca_02182 I 0.670
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.670
Cla014191 Citrullus lanatus Cla014191 I 0.670
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.670
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.670
mgf002573m Mimulus guttatus mgf002573m I 0.669
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.668
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.668
Bra010593 Brassica rapa Bra010593 I 0.668
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.668
PK29071.1 Cannabis sativa PK29071.1 I 0.667
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.667
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.667
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.666
Ca_12468 Cicer arietinum Ca_12468 I 0.666
Bo3g153550 Brassica oleracea Bo3g153550 I 0.665
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.663
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.662
Cla006872 Citrullus lanatus Cla006872 I 0.662
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.662
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.661
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.661