Carubv10019409m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10019409m.g T286388_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.853 0.925
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.853 0.925
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.673 0.656
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.669 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019409m Myb 11 58
Carubv10019409m Myb 64 109

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.909
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.909
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I 0.882
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.872
MYB27 Arabidopsis thaliana AT3G53200 D 0.853
Bo6g067190 Brassica oleracea Bo6g067190 I 0.849
Bra028550 Brassica rapa Bra028550 I 0.841
Bo8g082570 Brassica oleracea Bo8g082570 I 0.825
Bra006977 Brassica rapa Bra006977 I 0.808
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.790
AtMYB27 Vitis vinifera VIT_08s0007g04830 I 0.754
TCM_022293 Theobroma cacao TCM_022293 I 0.753
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I 0.736
PK10274.1 Cannabis sativa PK10274.1 I 0.734
orange1.1g044161m.g Citrus sinensis orange1.1g044161m.g I 0.731
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.726
GSMUA_Achr2G19380_001 Musa acuminata GSMUA_Achr2G19380_001 I 0.726
Gorai.009G413600 Gossypium raimondii Gorai.009G413600 I 0.725
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.723
gene09683-v1.0-hybrid Fragaria vesca gene09683-v1.0-hybrid I 0.718
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.716
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.715
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.714
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.712
TCM_018971 Theobroma cacao TCM_018971 I 0.710
orange1.1g047854m.g Citrus sinensis orange1.1g047854m.g I 0.710
Ciclev10013466m.g Citrus clementina Ciclev10013466m.g I 0.710
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.709
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.709
Pm015392 Prunus mume Pm015392 I 0.708
Eucgr.A01648 Eucalyptus grandis Eucgr.A01648 I 0.708
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.708
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.707
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.707
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.706
MYBAS2 Oryza sativa OS12G0567300 I 0.706
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.706
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.706
Si023104m.g Setaria italica Si023104m.g I 0.706
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.706
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.706
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.706
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.706
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.706
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.706
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.706
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.706
OB12G23080 Oryza brachyantha OB12G23080 I 0.706
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.706
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.705
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.704
OB11G27690 Oryza brachyantha OB11G27690 I 0.704
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.704
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.703
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.703
OBART01G45730 Oryza barthii OBART01G45730 I 0.703
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.703
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.703
OB01G54920 Oryza brachyantha OB01G54920 I 0.703
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.703
GSMUA_Achr10G14030_001 Musa acuminata GSMUA_Achr10G14030_001 I 0.702
GSMUA_Achr6G14840_001 Musa acuminata GSMUA_Achr6G14840_001 I 0.702
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.699
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.699
F775_29427 Aegilops tauschii F775_29427 I 0.699
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.699
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.697
F775_06315 Aegilops tauschii F775_06315 I 0.697
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.697
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I 0.695
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I 0.694
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.693
MDP0000286143 Malus domestica MDP0000286143 I 0.692
GSMUA_Achr5G06530_001 Musa acuminata GSMUA_Achr5G06530_001 I 0.691
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.689
Solyc05g053150.1 Solanum lycopersicum Solyc05g053150.1 I 0.689
MTR_1g062940 Medicago truncatula MTR_1g062940 N 0.687
MTR_1g073170 Medicago truncatula MTR_1g073170 I 0.686
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.686
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I 0.685
ATMYB121 Vitis vinifera VIT_14s0083g01060 I 0.685
Si010822m.g Setaria italica Si010822m.g I 0.685
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.684
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.683
Cla016762 Citrullus lanatus Cla016762 I 0.683
Cucsa.238540 Cucumis sativus Cucsa.238540 I 0.683
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.683
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.683
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.683
GLYMA20G20980 Glycine max GLYMA20G20980 I 0.683
Bra015029 Brassica rapa Bra015029 I 0.680
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.680
Bra001941 Brassica rapa Bra001941 I 0.680
MTR_1g045610 Medicago truncatula MTR_1g045610 I 0.680
Bo1g098860 Brassica oleracea Bo1g098860 I 0.680
Bra028369 Brassica rapa Bra028369 I 0.680
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I 0.680
GSMUA_Achr1G03450_001 Musa acuminata GSMUA_Achr1G03450_001 I 0.680
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I 0.680
MYB305 Arabidopsis thaliana AT3G24310 I 0.680
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.680
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.680
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.680
Bo7g033260 Brassica oleracea Bo7g033260 I 0.680
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.680
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I 0.680
mgf004640m Mimulus guttatus mgf004640m I 0.680
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.680
Pm009050 Prunus mume Pm009050 I 0.680
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I 0.680
Bo3g083130 Brassica oleracea Bo3g083130 I 0.680
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I 0.680
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I 0.679
SapurV1A.0323s0160 Salix purpurea SapurV1A.0323s0160 I 0.679
ATMYB121 Arabidopsis lyrata fgenesh2_kg.5__710__AT3G30210.1 I 0.678
Solyc10g083900.1 Solanum lycopersicum Solyc10g083900.1 N 0.678
Cagra.0690s0007 Capsella grandiflora Cagra.0690s0007 I 0.678
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.678
PGSC0003DMG400028282 Solanum tuberosum PGSC0003DMG400028282 N 0.678
SapurV1A.0589s0170 Salix purpurea SapurV1A.0589s0170 I 0.678
Carubv10014443m.g Capsella rubella Carubv10014443m.g I 0.678
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.677
OB05G11070 Oryza brachyantha OB05G11070 I 0.677
OBART05G01080 Oryza barthii OBART05G01080 I 0.677
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.677
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I 0.677
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.677
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I 0.677
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.677
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.677
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.677
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.677
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.677
BGIOSGA014750 Oryza indica BGIOSGA014750 I 0.676
ORUFI04G19690 Oryza rufipogon ORUFI04G19690 I 0.676
Bo7g088650 Brassica oleracea Bo7g088650 I 0.676
Pavir.Ga01308 Panicum virgatum Pavir.Ga01308 I 0.676
OB04G25360 Oryza brachyantha OB04G25360 I 0.676
OS04G0508500 Oryza sativa OS04G0508500 I 0.676
ORGLA04G0153500 Oryza glaberrima ORGLA04G0153500 I 0.676
LPERR04G14700 Leersia perrieri LPERR04G14700 I 0.676
MDP0000143156 Malus domestica MDP0000143156 I 0.675
Lus10023711.g Linum usitatissimum Lus10023711.g I 0.675
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.674
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.674
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.674
Gorai.001G207500 Gossypium raimondii Gorai.001G207500 I 0.674
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.674
Ca_07872 Cicer arietinum Ca_07872 I 0.674
Cagra.1138s0003 Capsella grandiflora Cagra.1138s0003 I 0.673
F775_14172 Aegilops tauschii F775_14172 I 0.673
Carubv10018530m.g Capsella rubella Carubv10018530m.g I 0.673
Bostr.0556s0619 Boechera stricta Bostr.0556s0619 I 0.673
Bo9g009020 Brassica oleracea Bo9g009020 I 0.673
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.673
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.673
Bra025410 Brassica rapa Bra025410 I 0.673
GSMUA_Achr7G13700_001 Musa acuminata GSMUA_Achr7G13700_001 I 0.673
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.673
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.673
Cla008413 Citrullus lanatus Cla008413 I 0.673
ATMYB121 Arabidopsis thaliana AT3G30210 D 0.673
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.673
Gorai.001G090100 Gossypium raimondii Gorai.001G090100 I 0.672
Si022826m.g Setaria italica Si022826m.g I 0.670
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I 0.670
Pavir.J04129 Panicum virgatum Pavir.J04129 I 0.670
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.669
MYB59 Arabidopsis thaliana AT5G59780 D 0.669
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.669
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.669
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.669
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.669
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.669
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.669
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.669
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.669
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.669
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.669
Si026803m.g Setaria italica Si026803m.g I 0.669
MDP0000177010 Malus domestica MDP0000177010 I 0.669
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.669
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.669
Pm000809 Prunus mume Pm000809 I 0.669
TCM_041904 Theobroma cacao TCM_041904 I 0.669
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.669
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.669
Sb09g001590 Sorghum bicolor Sb09g001590 I 0.668
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.668
Thhalv10022057m.g Eutrema salsugineum Thhalv10022057m.g I 0.668
MYB5 Arabidopsis thaliana AT3G13540 I 0.668
ATMYB5 Arabidopsis lyrata scaffold_301556.1 I 0.668
Solyc09g008390.1 Solanum lycopersicum Solyc09g008390.1 I 0.668
Bo1g138250 Brassica oleracea Bo1g138250 I 0.668
Bostr.3640s0147 Boechera stricta Bostr.3640s0147 I 0.668
cassava15759.m1 Manihot esculenta cassava15759.m1 N 0.668
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.668
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.667
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.667
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.666
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.666
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.666
Bra018223 Brassica rapa Bra018223 I 0.666
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.666
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.666
Bra027423 Brassica rapa Bra027423 I 0.666
PRUPE_ppa024805mg Prunus persica PRUPE_ppa024805mg N 0.666
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.666
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.666
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.666
Cla013488 Citrullus lanatus Cla013488 I 0.666
Bo3g130340 Brassica oleracea Bo3g130340 I 0.666
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.665
PK13689.1 Cannabis sativa PK13689.1 I 0.665
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.665
Bra039395 Brassica rapa Bra039395 I 0.665
Si024470m.g Setaria italica Si024470m.g I 0.665
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.664
LjT20L14.140.nd Lotus japonicus LjT20L14.140.nd I 0.663
Pm026334 Prunus mume Pm026334 N 0.663
Lus10034372.g Linum usitatissimum Lus10034372.g I 0.662
GLYMA10G06680 Glycine max GLYMA10G06680 N 0.662