CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10021327m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10021327m.g
T286410_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.897
0.978
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.897
0.978
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.767
0.849
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.767
0.849
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.726
0.785
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.726
0.785
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10021327m
Myb
70
116
RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQL
Carubv10021327m
Myb
122
167
RRAFTEEEEERLLQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIM
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
382 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy