Carubv10023736m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10023736m.g T286425_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN

NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.902 0.979
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN

NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.785 0.883
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN

NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.736 0.819
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN

NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.736 0.819
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.661 0.809
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.661 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023736m Myb 140 187

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
4144_YDR207C Saccharomyces mikatae 4144_YDR207C I 0.000
4486_YDR207C Saccharomyces bayanus 4486_YDR207C I 0.000
4509_YDR207C Saccharomyces paradoxus 4509_YDR207C I 0.000
KLTH0F08074g Lachancea thermotolerans KLTH0F08074g I 0.000
KLTH0F08074g Kluyveromyces thermotolerans KLTH0F08074g I 0.000
Kwal_3178 Kluyveromyces waltii Kwal_3178 I 0.000
LALA0_S12e02542g Lachancea lanzarotensis LALA0_S12e02542g N 0.000
SU7_2610 Saccharomyces arboricola SU7_2610 I 0.000
TBLA_0H00720 Tetrapisispora blattae TBLA_0H00720 I 0.000
UME6 Saccharomyces cerevisiae YDR207C D 0.000
ZBAI_01674 Zygosaccharomyces bailii ZBAI_01674 I 0.000
ZYRO0C04686g Zygosaccharomyces rouxii ZYRO0C04686g I 0.000