CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10003958m.g
(
Citrus clementina
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Ciclev10003958m.g
T286493_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.828
0.914
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.828
0.914
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.794
0.828
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.794
0.828
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.785
0.860
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.785
0.860
MYB106
M11040_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.771
0.796
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.746
0.763
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.711
0.817
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.687
0.688
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.687
0.688
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.678
0.774
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.678
0.774
AtMYB10
M07081_2.00
Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB10_col_a
0.678
0.688
AtMYB10
M07082_2.00
Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB10_colamp_a
0.678
0.688
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.666
0.753
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.666
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10003958m
Myb
14
61
KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL
Ciclev10003958m
Myb
67
112
RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL
Links
Other
Myb/SANT
family TFs
Other
Citrus clementina
TFs
826 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy