Ciclev10006455m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10006455m.g T286511_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.701 0.688
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.672 0.667
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH

DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.672 0.667
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.669 0.699
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.669 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10006455m Myb 16 63
Ciclev10006455m Myb 69 114

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB106 Arabidopsis thaliana AT3G01140 D 0.701
MYB107 Arabidopsis thaliana AT3G02940 D 0.669
MYB39 Arabidopsis thaliana AT4G17785 D 0.672
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.672
Pm004557 Prunus mume Pm004557 I 0.665
Cla010483 Citrullus lanatus Cla010483 I 0.701
Ca_27606 Cicer arietinum Ca_27606 I 0.695
Ca_22367 Cicer arietinum Ca_22367 I 0.701
Ca_10504 Cicer arietinum Ca_10504 I 0.701
VIT_17s0000g06410 Vitis vinifera VIT_17s0000g06410 I 0.711
VIT_14s0108g01080 Vitis vinifera VIT_14s0108g01080 I 0.701
VIT_01s0026g02770 Vitis vinifera VIT_01s0026g02770 I 0.701
TRIUR3_25784 Triticum urartu TRIUR3_25784 I 0.671
Pm015916 Prunus mume Pm015916 I 0.701
Pm019588 Prunus mume Pm019588 I 0.679
cassava1759.valid.m1 Manihot esculenta cassava1759.valid.m1 I 0.701
Bostr.2902s0269 Boechera stricta Bostr.2902s0269 I 0.701
Bostr.19046s0006 Boechera stricta Bostr.19046s0006 I 0.669
Bostr.1460s0105 Boechera stricta Bostr.1460s0105 I 0.701
mgf016794m Mimulus guttatus mgf016794m I 0.687
Cucsa.158170 Cucumis sativus Cucsa.158170 I 0.701
cassava3811.m1 Manihot esculenta cassava3811.m1 I 0.702
cassava360.valid.m1 Manihot esculenta cassava360.valid.m1 I 0.701
cassava26282.m1 Manihot esculenta cassava26282.m1 I 0.683
cassava20416.m1 Manihot esculenta cassava20416.m1 I 0.666
TRIUR3_14330 Triticum urartu TRIUR3_14330 I 0.676
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.672
Si013994m.g Setaria italica Si013994m.g I 0.701
Si010384m.g Setaria italica Si010384m.g I 0.665
Si010352m.g Setaria italica Si010352m.g I 0.671
Sb07g021210 Sorghum bicolor Sb07g021210 I 0.679
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.675
PRUPE_ppa026006mg Prunus persica PRUPE_ppa026006mg I 0.665
PRUPE_ppa017039mg Prunus persica PRUPE_ppa017039mg I 0.679
PRUPE_ppa006769mg Prunus persica PRUPE_ppa006769mg I 0.701
POPTR_0017s12230 Populus trichocarpa POPTR_0017s12230 I 0.701
Solyc02g088190.2 Solanum lycopersicum Solyc02g088190.2 I 0.681
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.676
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.668
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.672
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I 0.676
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.672
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I 0.676
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.672
Traes_2DL_C964675DE Triticum aestivum Traes_2DL_C964675DE I 0.671
TCM_018639 Theobroma cacao TCM_018639 I 0.701
TCM_011659 Theobroma cacao TCM_011659 I 0.701
TCM_001102 Theobroma cacao TCM_001102 I 0.689
POPTR_0010s17300 Populus trichocarpa POPTR_0010s17300 I 0.690
Cagra.0917s0061 Capsella grandiflora Cagra.0917s0061 I 0.665
LjSGA_020545.1 Lotus japonicus LjSGA_020545.1 I 0.701
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.701
orange1.1g041991m.g Citrus sinensis orange1.1g041991m.g I 0.909
orange1.1g016708m.g Citrus sinensis orange1.1g016708m.g I 0.701
MDP0000868578 Malus domestica MDP0000868578 I 0.671
MDP0000742771 Malus domestica MDP0000742771 I 0.701
MDP0000716457 Malus domestica MDP0000716457 I 0.698
MDP0000574942 Malus domestica MDP0000574942 I 0.669
MDP0000278681 Malus domestica MDP0000278681 I 0.701
MDP0000274301 Malus domestica MDP0000274301 I 0.701
Pavir.J33881 Panicum virgatum Pavir.J33881 I 0.701
SapurV1A.0063s0570 Salix purpurea SapurV1A.0063s0570 I 0.690
SapurV1A.0302s0210 Salix purpurea SapurV1A.0302s0210 I 0.679
chr5.CM0148.360.nc Lotus japonicus chr5.CM0148.360.nc I 0.679
chr1.CM0141.320.nc Lotus japonicus chr1.CM0141.320.nc I 0.681
PK22137.1 Cannabis sativa PK22137.1 I 0.701
Thhalv10022405m.g Eutrema salsugineum Thhalv10022405m.g I 0.669
Thhalv10014101m.g Eutrema salsugineum Thhalv10014101m.g I 0.701
Thhalv10004620m.g Eutrema salsugineum Thhalv10004620m.g I 0.665
SapurV1A.3756s0010 Salix purpurea SapurV1A.3756s0010 I 0.679
SapurV1A.0801s0120 Salix purpurea SapurV1A.0801s0120 I 0.676
SapurV1A.0438s0010 Salix purpurea SapurV1A.0438s0010 I 0.701
MDP0000121476 Malus domestica MDP0000121476 I 0.701
Lus10033003.g Linum usitatissimum Lus10033003.g I 0.701
Ciclev10011948m.g Citrus clementina Ciclev10011948m.g I 0.701
Carubv10026822m.g Capsella rubella Carubv10026822m.g I 0.665
Carubv10016434m.g Capsella rubella Carubv10016434m.g I 0.669
Carubv10013887m.g Capsella rubella Carubv10013887m.g I 0.701
Carubv10003148m.g Capsella rubella Carubv10003148m.g I 0.675
Carubv10001433m.g Capsella rubella Carubv10001433m.g I 0.701
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.701
Cagra.1194s0007 Capsella grandiflora Cagra.1194s0007 I 0.669
Cagra.1085s0031 Capsella grandiflora Cagra.1085s0031 I 0.675
Eucgr.J01362 Eucalyptus grandis Eucgr.J01362 I 0.701
evm.TU.supercontig_107.48 Carica papaya evm.TU.supercontig_107.48 I 0.675
evm.TU.supercontig_14.102 Carica papaya evm.TU.supercontig_14.102 I 0.701
Lus10026620.g Linum usitatissimum Lus10026620.g I 0.662
Gorai.013G088300 Gossypium raimondii Gorai.013G088300 I 0.671
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.671
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I 0.701
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I 0.672
Gorai.003G039500 Gossypium raimondii Gorai.003G039500 I 0.668
gene30024-v1.0-hybrid Fragaria vesca gene30024-v1.0-hybrid I 0.695
gene04423-v1.0-hybrid Fragaria vesca gene04423-v1.0-hybrid I 0.701
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.662
Cagra.1036s0022 Capsella grandiflora Cagra.1036s0022 I 0.701
LPERR08G12960 Leersia perrieri LPERR08G12960 I 0.701
GLYMA19G02890 Glycine max GLYMA19G02890 I 0.691
GLYMA18G49630 Glycine max GLYMA18G49630 I 0.701
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.670
GLYMA13G05550 Glycine max GLYMA13G05550 I 0.701
GLYMA09G37040 Glycine max GLYMA09G37040 I 0.701
GLYMA07G35561 Glycine max GLYMA07G35561 I 0.692
ATMYB16 Arabidopsis lyrata fgenesh2_kg.6__1513__AT5G15310.1 I 0.701
MYB107 Arabidopsis lyrata fgenesh2_kg.3__241__AT3G02940.1 I 0.669
MYB106 Arabidopsis lyrata fgenesh2_kg.3__117__AT3G01140.1 I 0.701
GLYMA20G04240 Glycine max GLYMA20G04240 I 0.692
GRMZM2G032655 Zea mays GRMZM2G032655 I 0.671
GRMZM2G038722 Zea mays GRMZM2G038722 I 0.662
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.679
GSMUA_Achr7G18410_001 Musa acuminata GSMUA_Achr7G18410_001 I 0.671
GSMUA_Achr6G02550_001 Musa acuminata GSMUA_Achr6G02550_001 I 0.671
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.667
GSMUA_Achr10G29680_001 Musa acuminata GSMUA_Achr10G29680_001 I 0.664
GSMUA_Achr10G24560_001 Musa acuminata GSMUA_Achr10G24560_001 I 0.663
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.675
GRMZM2G111117 Zea mays GRMZM2G111117 I 0.669
GRMZM2G079123 Zea mays GRMZM2G079123 I 0.701
F775_26161 Aegilops tauschii F775_26161 I 0.671
F775_14744 Aegilops tauschii F775_14744 I 0.676
BRADI5G12417 Brachypodium distachyon BRADI5G12417 I 0.671
Bo1g157620 Brassica oleracea Bo1g157620 I 0.681
Bo1g155040 Brassica oleracea Bo1g155040 I 0.669
BGIOSGA026935 Oryza indica BGIOSGA026935 I 0.701
BGIOSGA016547 Oryza indica BGIOSGA016547 I 0.671
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.666
BGIOSGA008493 Oryza indica BGIOSGA008493 I 0.671
BGIOSGA005798 Oryza indica BGIOSGA005798 I 0.679
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.701
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.690
Bo3g010230 Brassica oleracea Bo3g010230 I 0.684
Bo5g150350 Brassica oleracea Bo5g150350 I 0.664
Bo5g156410 Brassica oleracea Bo5g156410 I 0.701
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.664
BRADI3G36660 Brachypodium distachyon BRADI3G36660 I 0.684
Bra039142 Brassica rapa Bra039142 I 0.701
Bra032028 Brassica rapa Bra032028 I 0.669
Bra023515 Brassica rapa Bra023515 I 0.684
Bra021483 Brassica rapa Bra021483 I 0.681
Bra021382 Brassica rapa Bra021382 I 0.669
Bra008705 Brassica rapa Bra008705 I 0.701
Bo9g164230 Brassica oleracea Bo9g164230 I 0.701
AMTR_s00010p00267100 Amborella trichopoda AMTR_s00010p00267100 I 0.706
POPTR_0008s08920 Populus trichocarpa POPTR_0008s08920 I 0.676
ORGLA04G0119800 Oryza glaberrima ORGLA04G0119800 I 0.671
OPUNC08G13770 Oryza punctata OPUNC08G13770 I 0.701
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.666
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.679
ONIVA08G16810 Oryza nivara ONIVA08G16810 I 0.701
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.666
ONIVA04G13130 Oryza nivara ONIVA04G13130 I 0.671
ONIVA02G31530 Oryza nivara ONIVA02G31530 I 0.679
ONIVA02G24090 Oryza nivara ONIVA02G24090 I 0.671
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.666
ORGLA08G0137800 Oryza glaberrima ORGLA08G0137800 I 0.701
ORUFI02G22940 Oryza rufipogon ORUFI02G22940 I 0.671
POPTR_0008s08870 Populus trichocarpa POPTR_0008s08870 I 0.676
PGSC0003DMG400001339 Solanum tuberosum PGSC0003DMG400001339 I 0.701
OS04G0594100 Oryza sativa OS04G0594100 I 0.666
OS04G0461000 Oryza sativa OS04G0461000 I 0.671
OS02G0695200 Oryza sativa OS02G0695200 I 0.679
ORUFI08G17610 Oryza rufipogon ORUFI08G17610 I 0.701
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.666
ORUFI04G16390 Oryza rufipogon ORUFI04G16390 I 0.671
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I 0.679
OMERI08G12990 Oryza meridionalis OMERI08G12990 I 0.701
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.666
OMERI02G27850 Oryza meridionalis OMERI02G27850 I 0.679
OB08G23170 Oryza brachyantha OB08G23170 I 0.701
OB04G22310 Oryza brachyantha OB04G22310 I 0.671
OB02G35920 Oryza brachyantha OB02G35920 I 0.676
OB02G29290 Oryza brachyantha OB02G29290 I 0.671
OBART02G21860 Oryza barthii OBART02G21860 I 0.671
MTR_6g012690 Medicago truncatula MTR_6g012690 I 0.681
MTR_4g082290 Medicago truncatula MTR_4g082290 I 0.678
MTR_4g082230 Medicago truncatula MTR_4g082230 I 0.664
MLOC_71418 Hordeum vulgare MLOC_71418 I 0.676
OBART02G28790 Oryza barthii OBART02G28790 I 0.679
OBART04G14990 Oryza barthii OBART04G14990 I 0.671
OMERI02G21400 Oryza meridionalis OMERI02G21400 I 0.671
OLONG_022853 Oryza longistaminata OLONG_022853 I 0.679
OLONG_004507 Oryza longistaminata OLONG_004507 I 0.701
OGLUM08G16450 Oryza glumaepatula OGLUM08G16450 I 0.701
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.666
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I 0.679
OGLUM02G22040 Oryza glumaepatula OGLUM02G22040 I 0.671
OBART08G15700 Oryza barthii OBART08G15700 I 0.701
OBART04G23680 Oryza barthii OBART04G23680 I 0.666
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.672
mgf004667m Mimulus guttatus mgf004667m N 0.692