CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10007648m.g
(
Citrus clementina
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Ciclev10007648m.g
T286523_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARR1
M02296_2.00
Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN
PBM
Weirauch et al.(2014)
pTH8257
0.777
0.830
ARR1
M02297_2.00
Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN
PBM
Weirauch et al.(2014)
pTH8590
0.775
0.830
ARR10
M02702_2.00
Arabidopsis thaliana
AGATHYKN
NMRDATCT
SELEX
Mathelier et al.(2014)
MA0121.1
0.733
0.809
ARR10
M11045_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ARR10_01
0.733
0.809
ARR18
M02313_2.00
Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN
PBM
Weirauch et al.(2014)
pTH8840
0.721
0.830
GPRI1
M00874_2.00
Arabidopsis thaliana
NNDATHN
NDATHNN
PBM
Franco-Zorrilla et al.(2014)
GLK1
0.688
0.745
estExt_fgenesh1_pg.C_Chr_16.00010090
M02367_2.00
Ostreococcus tauri
NNNDATCN
NGATHNNN
PBM
Weirauch et al.(2014)
pTH9644
0.672
0.809
e_gw1.362.4.1
M02341_2.00
Physcomitrella patens
NNNRDATCNN
NNGATHYNNN
PBM
Weirauch et al.(2014)
pTH8461
0.664
0.787
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10007648m
Myb
214
264
RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFR
Links
Other
Myb/SANT
family TFs
Other
Citrus clementina
TFs
346 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy