CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10009173m.g
(
Citrus clementina
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Ciclev10009173m.g
T286529_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.761
0.761
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.761
0.761
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.761
0.761
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.761
0.761
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.743
0.826
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.743
0.826
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.737
0.826
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.685
0.761
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.678
0.739
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10009169m
Myb
5
56
KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNM
Ciclev10009173m
Myb
5
56
KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNM
Links
Other
Myb/SANT
family TFs
Other
Citrus clementina
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.909
29912.m005376
Ricinus communis
29912.m005376
I
0.901
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.879
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.871
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.867
PK00568.1
Cannabis sativa
PK00568.1
I
0.863
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.855
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.854
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.854
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.854
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.854
Pm027209
Prunus mume
Pm027209
I
0.846
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.846
MDP0000265359
Malus domestica
MDP0000265359
I
0.846
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.840
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.840
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.833
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.829
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.787
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.787
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.787
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.785
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.785
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.785
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.785
TCM_000807
Theobroma cacao
TCM_000807
I
0.785
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.776
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.776
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.774
29661.m000926
Ricinus communis
29661.m000926
I
0.774
Cagra.0342s0046
Capsella grandiflora
Cagra.0342s0046
I
0.771
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.771
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.771
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.771
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.771
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.771
Bra029978
Brassica rapa
Bra029978
I
0.771
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.771
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.771
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.771
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.771
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.765
mgf011386m
Mimulus guttatus
mgf011386m
I
0.762
mgf007122m
Mimulus guttatus
mgf007122m
I
0.762
TRB2
Arabidopsis thaliana
AT5G67580
D
0.761
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.761
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.758
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.758
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.758
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.753
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.751
OS01G0589300
Oryza sativa
OS01G0589300
I
0.751
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.751
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.751
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.751
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.751
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.751
OBART01G21150
Oryza barthii
OBART01G21150
I
0.751
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.751
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.751
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.751
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.750
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.750
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.743
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.743
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.740
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.740
Si002467m.g
Setaria italica
Si002467m.g
I
0.737
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.737
OB01G37330
Oryza brachyantha
OB01G37330
I
0.737
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.737
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.737
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.737
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.737
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.737
OBART01G28260
Oryza barthii
OBART01G28260
I
0.737
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.737
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.737
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.737
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.737
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.737
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.737
OS01G0708000
Oryza sativa
OS01G0708000
D
0.737
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.737
Bra016037
Brassica rapa
Bra016037
I
0.735
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.735
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.735
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.734
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.734
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.734
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.734
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.734
Bra024438
Brassica rapa
Bra024438
I
0.732
Bra037837
Brassica rapa
Bra037837
I
0.732
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.732
Bo3g096520
Brassica oleracea
Bo3g096520
I
0.732
Bo9g019040
Brassica oleracea
Bo9g019040
I
0.732
TRB3
Arabidopsis thaliana
AT3G49850
I
0.732
Bra037839
Brassica rapa
Bra037839
I
0.732
Bra016598
Brassica rapa
Bra016598
I
0.731
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.731
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.731
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.729
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.725
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.725
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.725
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.725
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.723
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.723
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.723
Pm021139
Prunus mume
Pm021139
I
0.723
Bra030992
Brassica rapa
Bra030992
I
0.723
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.719
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.719
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.719
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.718
29706.m001328
Ricinus communis
29706.m001328
I
0.717
TCM_029078
Theobroma cacao
TCM_029078
I
0.717
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.717
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.717
OB01G30760
Oryza brachyantha
OB01G30760
I
0.717
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.716
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.713
Bra025967
Brassica rapa
Bra025967
I
0.713
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.712
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.712
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.712
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.712
29812.m000204
Ricinus communis
29812.m000204
I
0.712
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.712
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.712
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.709
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.709
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.709
Pm013309
Prunus mume
Pm013309
I
0.708
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.708
Ca_02722
Cicer arietinum
Ca_02722
I
0.707
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.705
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.705
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.705
Bra030894
Brassica rapa
Bra030894
I
0.705
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.705
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.701
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.697
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.694
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.691
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.690
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.690
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.689
Thhalv10012087m.g
Eutrema salsugineum
Thhalv10012087m.g
I
0.689
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.685
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.685
MDP0000239354
Malus domestica
MDP0000239354
I
0.685
TCM_037620
Theobroma cacao
TCM_037620
I
0.685
Gorai.001G013000
Gossypium raimondii
Gorai.001G013000
I
0.685
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.685
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.685
Cla014248
Citrullus lanatus
Cla014248
I
0.685
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.685
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.685
Pm002374
Prunus mume
Pm002374
I
0.685
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.685
Ca_02232
Cicer arietinum
Ca_02232
I
0.685
Ca_09355
Cicer arietinum
Ca_09355
I
0.685
PK06103.1
Cannabis sativa
PK06103.1
D
0.685
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.685
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.685
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.685
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.685
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.685
Lus10025203.g
Linum usitatissimum
Lus10025203.g
I
0.682
Lus10012092.g
Linum usitatissimum
Lus10012092.g
I
0.682
Ca_10058
Cicer arietinum
Ca_10058
I
0.680
GRMZM2G023667
Zea mays
GRMZM2G023667
I
0.679
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.678
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.678
PK19870.1
Cannabis sativa
PK19870.1
I
0.678
TRB1
Arabidopsis thaliana
AT1G49950
D
0.678
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.678
Cla006547
Citrullus lanatus
Cla006547
I
0.678
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.678
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.678
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.678
Bra018818
Brassica rapa
Bra018818
I
0.678
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.678
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.678
Aquca_004_00181
Aquilegia coerulea
Aquca_004_00181
I
0.678
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.678
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.678
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.678
TCM_007242
Theobroma cacao
TCM_007242
I
0.678
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.676
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.676
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.675
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.674
MTR_8g494240
Medicago truncatula
MTR_8g494240
I
0.671
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.670
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.670
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.670
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.670
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.670
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.670
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.670
SELMODRAFT_49297
Selaginella moellendorffii
SELMODRAFT_49297
I
0.669
SELMODRAFT_49296
Selaginella moellendorffii
SELMODRAFT_49296
I
0.669
MDP0000234807
Malus domestica
MDP0000234807
I
0.668
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.668
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.665
Cla012798
Citrullus lanatus
Cla012798
I
0.665
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.662
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.662