Ciclev10009173m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10009173m.g T286529_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.761 0.761
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR

YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.761 0.761
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN

NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.761 0.761
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH

DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.761 0.761
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY

RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.743 0.826
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN

NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.743 0.826
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN

NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.737 0.826
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG

CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.685 0.761
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.678 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10009169m Myb 5 56
Ciclev10009173m Myb 5 56

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OS01G0708000 Oryza sativa OS01G0708000 D 0.737
PK06103.1 Cannabis sativa PK06103.1 D 0.685
TRB2 Arabidopsis thaliana AT5G67580 D 0.761
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.743
TRB1 Arabidopsis thaliana AT1G49950 D 0.678
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.716
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.771
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.771
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.678
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.854
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.670
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.771
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.678
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.871
mgf011386m Mimulus guttatus mgf011386m I 0.762
mgf007122m Mimulus guttatus mgf007122m I 0.762
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.765
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.709
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.678
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.725
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.785
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.771
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.709
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.771
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.725
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.678
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.771
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.678
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.690
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.690
Pm021139 Prunus mume Pm021139 I 0.723
Pm013309 Prunus mume Pm013309 I 0.708
Pm002374 Prunus mume Pm002374 I 0.685
Cla014248 Citrullus lanatus Cla014248 I 0.685
Cla012798 Citrullus lanatus Cla012798 I 0.665
Cla006547 Citrullus lanatus Cla006547 I 0.678
Ca_10058 Cicer arietinum Ca_10058 I 0.680
Ca_09355 Cicer arietinum Ca_09355 I 0.685
Ca_02722 Cicer arietinum Ca_02722 I 0.707
Ca_02232 Cicer arietinum Ca_02232 I 0.685
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.855
Pm027209 Prunus mume Pm027209 I 0.846
29661.m000926 Ricinus communis 29661.m000926 I 0.774
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.665
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.678
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.685
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.774
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.829
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.740
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.717
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.712
29912.m005376 Ricinus communis 29912.m005376 I 0.901
29812.m000204 Ricinus communis 29812.m000204 I 0.712
29706.m001328 Ricinus communis 29706.m001328 I 0.717
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.678
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.753
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.725
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.771
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.734
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.734
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.854
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.854
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.712
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.705
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.719
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.737
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.909
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.771
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.678
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.705
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.718
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.685
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.758
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.750
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.750
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.758
PK19870.1 Cannabis sativa PK19870.1 I 0.678
PK00568.1 Cannabis sativa PK00568.1 I 0.863
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.743
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.689
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.725
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.678
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.735
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.785
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.678
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.785
Gorai.001G013000 Gossypium raimondii Gorai.001G013000 I 0.685
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.685
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.867
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.732
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.717
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.701
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.712
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.734
Lus10012092.g Linum usitatissimum Lus10012092.g I 0.682
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.785
MDP0000265359 Malus domestica MDP0000265359 I 0.846
MDP0000239354 Malus domestica MDP0000239354 I 0.685
MDP0000234807 Malus domestica MDP0000234807 I 0.668
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.840
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.712
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.840
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.879
Lus10025203.g Linum usitatissimum Lus10025203.g I 0.682
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.734
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.712
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.675
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.697
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.685
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.685
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.685
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.685
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.676
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.676
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.685
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.685
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.771
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.709
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.678
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.679
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.719
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.685
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.729
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.670
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.737
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.751
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.787
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.685
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.691
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.787
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.787
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.668
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.761
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.670
Bo8g067280 Brassica oleracea Bo8g067280 I 0.731
Bo6g116150 Brassica oleracea Bo6g116150 I 0.735
Bo6g018740 Brassica oleracea Bo6g018740 I 0.678
Bo5g023860 Brassica oleracea Bo5g023860 I 0.713
Bo3g184590 Brassica oleracea Bo3g184590 I 0.705
Bo3g096520 Brassica oleracea Bo3g096520 I 0.732
Bo1g081300 Brassica oleracea Bo1g081300 I 0.771
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.737
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.751
TRB3 Arabidopsis thaliana AT3G49850 I 0.732
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.776
Bo8g104830 Brassica oleracea Bo8g104830 I 0.731
Bo9g019040 Brassica oleracea Bo9g019040 I 0.732
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.737
Bra037839 Brassica rapa Bra037839 I 0.732
Bra037837 Brassica rapa Bra037837 I 0.732
Bra030992 Brassica rapa Bra030992 I 0.723
Bra030894 Brassica rapa Bra030894 I 0.705
Bra029978 Brassica rapa Bra029978 I 0.771
Bra025967 Brassica rapa Bra025967 I 0.713
Bra024438 Brassica rapa Bra024438 I 0.732
Bra018818 Brassica rapa Bra018818 I 0.678
Bra016598 Brassica rapa Bra016598 I 0.731
Bra016037 Brassica rapa Bra016037 I 0.735
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.694
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.670
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.669
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.669
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.723
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.776
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.719
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.708
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.723
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.685
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.846
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.833
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.734
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.723
Si002467m.g Setaria italica Si002467m.g I 0.737
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.670
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.670
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.670
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.737
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.737
TCM_037620 Theobroma cacao TCM_037620 I 0.685
TCM_029078 Theobroma cacao TCM_029078 I 0.717
TCM_007242 Theobroma cacao TCM_007242 I 0.678
TCM_000807 Theobroma cacao TCM_000807 I 0.785
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.758
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.662
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.712
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.740
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.751
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.737
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.751
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.751
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.751
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.737
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.737
OBART01G28260 Oryza barthii OBART01G28260 I 0.737
OBART01G21150 Oryza barthii OBART01G21150 I 0.751
OB01G37330 Oryza brachyantha OB01G37330 I 0.737
OB01G30760 Oryza brachyantha OB01G30760 I 0.717
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.737
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.751
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.854
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.705
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.662
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.689
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.674
OS01G0589300 Oryza sativa OS01G0589300 I 0.751
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.737
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.751
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.737
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.751
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.737
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.671