Ciclev10016071m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10016071m.g T286575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G04760
M02304_2.00
Arabidopsis thaliana
NDGATAAGGN

NCCTTATCHN
PBM
Weirauch et al.(2014)
pTH7079
0.732 0.819
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016071m Myb 88 137
Ciclev10016071m Myb 182 229

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.818
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.818
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.806
TCM_041160 Theobroma cacao TCM_041160 I 0.793
Ca_05454 Cicer arietinum Ca_05454 I 0.787
TCM_041362 Theobroma cacao TCM_041362 N 0.759
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.752
Pm017050 Prunus mume Pm017050 I 0.752
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.749
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.746
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.745
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I 0.745
Bo9g178980 Brassica oleracea Bo9g178980 I 0.745
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.745
Carubv10003623m.g Capsella rubella Carubv10003623m.g I 0.745
Bra009432 Brassica rapa Bra009432 I 0.745
Thhalv10014613m.g Eutrema salsugineum Thhalv10014613m.g I 0.741
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.740
MDP0000289018 Malus domestica MDP0000289018 I 0.733
Bo3g002960 Brassica oleracea Bo3g002960 I 0.732
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.732
GSMUA_Achr11G09110_001 Musa acuminata GSMUA_Achr11G09110_001 N 0.731
Cla014242 Citrullus lanatus Cla014242 N 0.731
PGSC0003DMG400007603 Solanum tuberosum PGSC0003DMG400007603 N 0.731
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.728
Bra005818 Brassica rapa Bra005818 I 0.721
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.716
Gorai.006G118200 Gossypium raimondii Gorai.006G118200 I 0.716
Gorai.006G113100 Gossypium raimondii Gorai.006G113100 N 0.712
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.712
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.710
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.710
Bo2g006670 Brassica oleracea Bo2g006670 I 0.709
Cla013899 Citrullus lanatus Cla013899 N 0.708
Bra028780 Brassica rapa Bra028780 I 0.707
Solyc11g006720.1 Solanum lycopersicum Solyc11g006720.1 N 0.707
Cucsa.364590 Cucumis sativus Cucsa.364590 N 0.702
POPTR_0010s24710 Populus trichocarpa POPTR_0010s24710 I 0.698
30055.m001589 Ricinus communis 30055.m001589 I 0.696
MDP0000610242 Malus domestica MDP0000610242 N 0.691
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.690
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.685
Si022762m.g Setaria italica Si022762m.g N 0.683
Aquca_004_00257 Aquilegia coerulea Aquca_004_00257 N 0.683
PGSC0003DMG400023495 Solanum tuberosum PGSC0003DMG400023495 N 0.681
Solyc05g055240.2 Solanum lycopersicum Solyc05g055240.2 N 0.681
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.680
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.677
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.669
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.665
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.665
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.664
30131.m007263 Ricinus communis 30131.m007263 I 0.664
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.664
cassava44314.m1 Manihot esculenta cassava44314.m1 N 0.663
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.661