Ciclev10016303m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10016303m.g T286577_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.697 0.710
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.679 0.677
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.679 0.677
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.672 0.677
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.672 0.677
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.670 0.699
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.670 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016303m Myb 14 61
Ciclev10016303m Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.884
TCM_007865 Theobroma cacao TCM_007865 I 0.794
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I 0.783
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.783
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.783
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.776
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I 0.773
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.772
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I 0.762
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.761
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N 0.760
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.757
MDP0000155426 Malus domestica MDP0000155426 I 0.753
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.748
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N 0.747
PGSC0003DMG400026176 Solanum tuberosum PGSC0003DMG400026176 N 0.740
cassava26894.m1 Manihot esculenta cassava26894.m1 N 0.736
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.732
MDP0000407613 Malus domestica MDP0000407613 N 0.732
Pm015302 Prunus mume Pm015302 N 0.731
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.731
PK24260.1 Cannabis sativa PK24260.1 N 0.731
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.728
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.728
GLYMA12G32541 Glycine max GLYMA12G32541 N 0.727
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.726
Bo9g076410 Brassica oleracea Bo9g076410 I 0.725
Bra029553 Brassica rapa Bra029553 I 0.725
Lus10039735.g Linum usitatissimum Lus10039735.g I 0.725
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.723
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.720
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N 0.714
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N 0.711
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.710
Bra040181 Brassica rapa Bra040181 I 0.702
Solyc07g055000.1 Solanum lycopersicum Solyc07g055000.1 N 0.702
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.702
Bo1g017860 Brassica oleracea Bo1g017860 I 0.702
Bra021033 Brassica rapa Bra021033 I 0.702
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.701
TCM_030009 Theobroma cacao TCM_030009 I 0.700
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.700
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.700
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.700
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.700
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.700
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.700
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.700
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.700
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.700
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.700
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.700
Cla001360 Citrullus lanatus Cla001360 I 0.700
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.700
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.699
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.699
GLYMA06G45547 Glycine max GLYMA06G45547 N 0.698
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N 0.697
MDP0000492221 Malus domestica MDP0000492221 I 0.697
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.697
mgf018114m Mimulus guttatus mgf018114m I 0.697
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.697
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.697
Pm009892 Prunus mume Pm009892 I 0.697
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.697
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.697
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.696
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.696
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.696
Lus10011820.g Linum usitatissimum Lus10011820.g I 0.696
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.694
PK20358.1 Cannabis sativa PK20358.1 I 0.693
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.693
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.693
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.693
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.692
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I 0.692
Cla013211 Citrullus lanatus Cla013211 I 0.690
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.690
Cucsa.318610 Cucumis sativus Cucsa.318610 I 0.690
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.689
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.689
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N 0.689
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.689
TCM_020889 Theobroma cacao TCM_020889 I 0.687
PK03488.1 Cannabis sativa PK03488.1 I 0.687
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.686
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.684
GLYMA06G45570 Glycine max GLYMA06G45570 I 0.684
cassava14699.m1 Manihot esculenta cassava14699.m1 I 0.683
Bra038774 Brassica rapa Bra038774 I 0.683
Bo6g122640 Brassica oleracea Bo6g122640 I 0.682
Bo7g040780 Brassica oleracea Bo7g040780 I 0.681
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.681
Bo3g081700 Brassica oleracea Bo3g081700 I 0.681
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.681
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.681
Bra014929 Brassica rapa Bra014929 I 0.681
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.681
Bra001907 Brassica rapa Bra001907 I 0.681
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.680
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.680
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.680
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.680
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.680
Bo3g162580 Brassica oleracea Bo3g162580 I 0.680
Bra020892 Brassica rapa Bra020892 I 0.680
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.680
BRADI3G28830 Brachypodium distachyon BRADI3G28830 I 0.680
Bo8g049720 Brassica oleracea Bo8g049720 I 0.680
29933.m001454 Ricinus communis 29933.m001454 N 0.679
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.679
Ca_00232 Cicer arietinum Ca_00232 I 0.679
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.679
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.679
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.679
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.679
Ca_22597 Cicer arietinum Ca_22597 N 0.679
Bo7g107420 Brassica oleracea Bo7g107420 I 0.679
MYB58 Arabidopsis thaliana AT1G16490 D 0.679
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.678
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I 0.677
PK08038.1 Cannabis sativa PK08038.1 I 0.677
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I 0.677
MDP0000131822 Malus domestica MDP0000131822 I 0.677
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I 0.676
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.676
GLYMA10G00930 Glycine max GLYMA10G00930 I 0.676
GLYMA02G00820 Glycine max GLYMA02G00820 I 0.676
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I 0.676
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.676
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.676
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I 0.675
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I 0.675
Pm009880 Prunus mume Pm009880 N 0.674
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.673
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.673
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.673
OS10G0478300 Oryza sativa OS10G0478300 I 0.672
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.672
MYB39 Arabidopsis thaliana AT4G17785 D 0.672
PGSC0003DMG400016292 Solanum tuberosum PGSC0003DMG400016292 I 0.672
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.672
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.672
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.672
Solyc06g053610.2 Solanum lycopersicum Solyc06g053610.2 I 0.672
TCM_030020 Theobroma cacao TCM_030020 I 0.672
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.671
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.671
VIT_05s0049g01010 Vitis vinifera VIT_05s0049g01010 I 0.671
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.670
Bra026720 Brassica rapa Bra026720 I 0.670
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.670
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.670
Bo8g105490 Brassica oleracea Bo8g105490 I 0.670
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.670
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.670
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.670
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.670
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.670
MDP0000145050 Malus domestica MDP0000145050 I 0.669
GLYMA01G06192 Glycine max GLYMA01G06192 I 0.669
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.668
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.668
Ca_22021 Cicer arietinum Ca_22021 I 0.668
Solyc06g034000.1 Solanum lycopersicum Solyc06g034000.1 N 0.668
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.668
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.667
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N 0.667
MTR_2g089450 Medicago truncatula MTR_2g089450 N 0.667
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.667
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I 0.666
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.665
MYB14 Arabidopsis thaliana AT2G31180 I 0.665
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.665
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.665
Pm015547 Prunus mume Pm015547 I 0.664
Pm030488 Prunus mume Pm030488 I 0.664
PRUPE_ppa015081mg Prunus persica PRUPE_ppa015081mg N 0.664
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.664
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.664
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.664
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.663
Cla006077 Citrullus lanatus Cla006077 I 0.663
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.663
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.663
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.662
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I 0.662
GSMUA_Achr5G03520_001 Musa acuminata GSMUA_Achr5G03520_001 I 0.662
Gorai.013G143200 Gossypium raimondii Gorai.013G143200 I 0.662
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I 0.662
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.662
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.662
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.662
Bra003619 Brassica rapa Bra003619 I 0.661
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.661
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.661
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.661
Lus10031607.g Linum usitatissimum Lus10031607.g N 0.661
Carubv10020691m.g Capsella rubella Carubv10020691m.g I 0.661
Bo6g081140 Brassica oleracea Bo6g081140 I 0.661
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.661
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.661