Ciclev10017435m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10017435m.g T286581_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH

DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.669 0.688
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH

DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.669 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10017435m Myb 14 61
Ciclev10017435m Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I 0.909
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.832
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.817
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.769
PK29337.1 Cannabis sativa PK29337.1 I 0.751
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.742
Lus10018518.g Linum usitatissimum Lus10018518.g N 0.733
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.713
cassava14699.m1 Manihot esculenta cassava14699.m1 I 0.706
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.706
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I 0.706
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.703
cassava26895.m1 Manihot esculenta cassava26895.m1 N 0.703
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.703
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.701
TCM_007868 Theobroma cacao TCM_007868 I 0.698
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.696
gene01997-v1.0-hybrid Fragaria vesca gene01997-v1.0-hybrid I 0.696
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.694
Pm015302 Prunus mume Pm015302 N 0.689
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.689
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.688
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.687
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.684
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.683
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.683
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.682
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.681
MDP0000155426 Malus domestica MDP0000155426 I 0.680
mgf019234m Mimulus guttatus mgf019234m N 0.680
GLYMA06G45531 Glycine max GLYMA06G45531 N 0.679
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.679
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.679
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.678
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.676
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.676
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.676
OS10G0478300 Oryza sativa OS10G0478300 I 0.675
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.675
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.675
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.675
Si010814m.g Setaria italica Si010814m.g I 0.674
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.674
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.674
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.673
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.672
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.672
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.671
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.670
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.670
Pavir.Gb00650 Panicum virgatum Pavir.Gb00650 I 0.670
MYB58 Arabidopsis thaliana AT1G16490 D 0.669
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I 0.668
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I 0.668
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.667
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.667
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.666
Lus10033737.g Linum usitatissimum Lus10033737.g N 0.666
TCM_007865 Theobroma cacao TCM_007865 I 0.665
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.665
ONIVA04G17140 Oryza nivara ONIVA04G17140 I 0.665
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.664
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.664
mgf022141m Mimulus guttatus mgf022141m N 0.663
cassava5261.m1 Manihot esculenta cassava5261.m1 N 0.662
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.662
Lus10039735.g Linum usitatissimum Lus10039735.g I 0.662
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.662
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.662
TRIUR3_31731 Triticum urartu TRIUR3_31731 I 0.661