Ciclev10017526m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10017526m.g T286582_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.744 0.785
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.744 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10017526m Myb 201 247
Ciclev10017526m Myb 253 298

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.909
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.779
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.760
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.753
MYB118 Arabidopsis thaliana AT3G27785 D 0.744
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.736
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.729
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.727
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.727
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.727
Bra025299 Brassica rapa Bra025299 I 0.724
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.713
TCM_016909 Theobroma cacao TCM_016909 I 0.709
Bra033027 Brassica rapa Bra033027 I 0.697
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.697
29917.m001977 Ricinus communis 29917.m001977 I 0.696
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.693
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.692
MDP0000199939 Malus domestica MDP0000199939 I 0.690
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.689
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.689
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.689
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.689
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.689
Pm024743 Prunus mume Pm024743 I 0.689
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.689
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.689
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.689
Bo2g144970 Brassica oleracea Bo2g144970 I 0.688
Cla010586 Citrullus lanatus Cla010586 I 0.688
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.686
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.682
Pm000541 Prunus mume Pm000541 I 0.682
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.682
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.681
MDP0000319656 Malus domestica MDP0000319656 I 0.679
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.678
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.676
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.672
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.672
Ca_17294 Cicer arietinum Ca_17294 I 0.672
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.671
Pm015681 Prunus mume Pm015681 I 0.667
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.666
MDP0000215359 Malus domestica MDP0000215359 I 0.665
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.665
TCM_012087 Theobroma cacao TCM_012087 I 0.665
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.665
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.665
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.662
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.662
Cla019490 Citrullus lanatus Cla019490 I 0.662
30147.m013937 Ricinus communis 30147.m013937 I 0.662
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.662
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.662