CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10018311m.g
(
Citrus clementina
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Ciclev10018311m.g
T286594_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.669
0.688
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.669
0.688
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10018311m
Myb
14
61
RGAWSKEEDDKLRAYILRYGHWNWTQLPKFAGLSRSGKSCRLRWMNYL
Ciclev10018311m
Myb
67
112
HGNYTKEEEDTIIKTRQQHGNKWALIAAKLPGRTDNEIKNYWHTHL
Links
Other
Myb/SANT
family TFs
Other
Citrus clementina
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10017435m.g
Citrus clementina
Ciclev10017435m.g
I
0.909
orange1.1g042846m.g
Citrus sinensis
orange1.1g042846m.g
I
0.832
Ciclev10017677m.g
Citrus clementina
Ciclev10017677m.g
I
0.817
cassava6764.valid.m1
Manihot esculenta
cassava6764.valid.m1
I
0.769
PK29337.1
Cannabis sativa
PK29337.1
I
0.751
VIT_12s0134g00490
Vitis vinifera
VIT_12s0134g00490
I
0.742
Lus10018518.g
Linum usitatissimum
Lus10018518.g
N
0.733
GLYMA06G45554
Glycine max
GLYMA06G45554
I
0.713
cassava14699.m1
Manihot esculenta
cassava14699.m1
I
0.706
GSMUA_Achr11G22820_001
Musa acuminata
GSMUA_Achr11G22820_001
I
0.706
POPTR_0019s14120
Populus trichocarpa
POPTR_0019s14120
I
0.706
SapurV1A.0417s0150
Salix purpurea
SapurV1A.0417s0150
I
0.703
cassava26895.m1
Manihot esculenta
cassava26895.m1
N
0.703
GLYMA12G32530
Glycine max
GLYMA12G32530
I
0.703
Eucgr.D00042
Eucalyptus grandis
Eucgr.D00042
I
0.701
TCM_007868
Theobroma cacao
TCM_007868
I
0.698
gene01997-v1.0-hybrid
Fragaria vesca
gene01997-v1.0-hybrid
I
0.696
GLYMA12G11330
Glycine max
GLYMA12G11330
I
0.696
Eucgr.D00040
Eucalyptus grandis
Eucgr.D00040
I
0.694
PRUPE_ppa026553mg
Prunus persica
PRUPE_ppa026553mg
N
0.689
Pm015302
Prunus mume
Pm015302
N
0.689
GSMUA_Achr4G21910_001
Musa acuminata
GSMUA_Achr4G21910_001
I
0.688
VIT_12s0134g00480
Vitis vinifera
VIT_12s0134g00480
I
0.687
SapurV1A.0417s0130
Salix purpurea
SapurV1A.0417s0130
I
0.684
Bostr.24513s0107
Boechera stricta
Bostr.24513s0107
I
0.683
PDK_20s1320951g001
Phoenix dactylifera
PDK_20s1320951g001
I
0.683
Gorai.011G021300
Gossypium raimondii
Gorai.011G021300
N
0.682
GSMUA_Achr5G14600_001
Musa acuminata
GSMUA_Achr5G14600_001
I
0.681
MDP0000155426
Malus domestica
MDP0000155426
I
0.680
mgf019234m
Mimulus guttatus
mgf019234m
N
0.680
GSMUA_Achr5G18600_001
Musa acuminata
GSMUA_Achr5G18600_001
I
0.679
GLYMA06G45531
Glycine max
GLYMA06G45531
N
0.679
Ciclev10017679m.g
Citrus clementina
Ciclev10017679m.g
I
0.679
POPTR_0013s14560
Populus trichocarpa
POPTR_0013s14560
I
0.678
PGSC0003DMG400020071
Solanum tuberosum
PGSC0003DMG400020071
I
0.676
Eucgr.A01766
Eucalyptus grandis
Eucgr.A01766
I
0.676
GSMUA_Achr4G28850_001
Musa acuminata
GSMUA_Achr4G28850_001
I
0.676
ORUFI10G14060
Oryza rufipogon
ORUFI10G14060
I
0.675
OS10G0478300
Oryza sativa
OS10G0478300
I
0.675
SapurV1A.0048s0160
Salix purpurea
SapurV1A.0048s0160
N
0.675
BGIOSGA031688
Oryza indica
BGIOSGA031688
I
0.675
Gorai.002G016800
Gossypium raimondii
Gorai.002G016800
I
0.674
Eucgr.H00158
Eucalyptus grandis
Eucgr.H00158
I
0.674
Si010814m.g
Setaria italica
Si010814m.g
I
0.674
evm.TU.supercontig_27.156
Carica papaya
evm.TU.supercontig_27.156
N
0.673
Eucgr.D00050
Eucalyptus grandis
Eucgr.D00050
N
0.672
orange1.1g037956m.g
Citrus sinensis
orange1.1g037956m.g
N
0.672
OB0039G10010
Oryza brachyantha
OB0039G10010
I
0.671
POPTR_0011s04020
Populus trichocarpa
POPTR_0011s04020
N
0.670
cassava25784.m1
Manihot esculenta
cassava25784.m1
I
0.670
Pavir.Gb00650
Panicum virgatum
Pavir.Gb00650
I
0.670
MYB58
Arabidopsis thaliana
AT1G16490
D
0.669
ORGLA04G0158700
Oryza glaberrima
ORGLA04G0158700
I
0.668
ORUFI04G20280
Oryza rufipogon
ORUFI04G20280
I
0.668
Solyc06g083900.2
Solanum lycopersicum
Solyc06g083900.2
I
0.667
Eucgr.D00037
Eucalyptus grandis
Eucgr.D00037
N
0.667
Lus10033737.g
Linum usitatissimum
Lus10033737.g
N
0.666
GSMUA_Achr4G18180_001
Musa acuminata
GSMUA_Achr4G18180_001
I
0.666
Lus10033738.g
Linum usitatissimum
Lus10033738.g
N
0.665
TCM_007865
Theobroma cacao
TCM_007865
I
0.665
ONIVA04G17140
Oryza nivara
ONIVA04G17140
I
0.665
Gorai.013G071600
Gossypium raimondii
Gorai.013G071600
I
0.664
Gorai.013G072900
Gossypium raimondii
Gorai.013G072900
I
0.664
mgf022141m
Mimulus guttatus
mgf022141m
N
0.663
GSMUA_Achr5G03920_001
Musa acuminata
GSMUA_Achr5G03920_001
I
0.662
Gorai.008G151100
Gossypium raimondii
Gorai.008G151100
I
0.662
Lus10039735.g
Linum usitatissimum
Lus10039735.g
I
0.662
cassava5261.m1
Manihot esculenta
cassava5261.m1
N
0.662
Lus10039734.g
Linum usitatissimum
Lus10039734.g
I
0.662
TRIUR3_31731
Triticum urartu
TRIUR3_31731
I
0.661