Ciclev10020967m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10020967m.g T286609_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH

DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.889 0.957
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY

RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.889 0.957
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN

NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.875 0.957
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH

DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.868 0.946
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN

NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.868 0.946
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH

DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.858 0.957
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH

DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.858 0.957
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN

NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.850 0.946
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH

DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.850 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10020967m Myb 14 61
Ciclev10020967m Myb 67 112
Ciclev10021698m Myb 1 36

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

320 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
18885_YNL027W Saccharomyces mikatae 18885_YNL027W I 0.000
19232_YNL027W Saccharomyces paradoxus 19232_YNL027W I 0.000
21534_YNL027W Saccharomyces bayanus 21534_YNL027W I 0.000
AACERI_AaceriADL198W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL198W I 0.000
AGOS_ADL198W Ashbya gossypii AGOS_ADL198W I 0.000
BN7_1577 Wickerhamomyces ciferrii BN7_1577 I 0.000
CAGL0M06831g Candida glabrata CAGL0M06831g I 0.000
CLUG_04763 Candida lusitaniae CLUG_04763 N 0.000
CLUG_04763 Clavispora lusitaniae CLUG_04763 N 0.000
Ecym_3341 Eremothecium cymbalariae Ecym_3341 I 0.000
KAFR_0H03240 Kazachstania africana KAFR_0H03240 I 0.000
KLLA0_E08713g Kluyveromyces lactis KLLA0_E08713g I 0.000
KLTH0G10802g Kluyveromyces thermotolerans KLTH0G10802g I 0.000
KLTH0G10802g Lachancea thermotolerans KLTH0G10802g I 0.000
Kpol_1003p50 Vanderwaltozyma polyspora Kpol_1003p50 I 0.000
Kwal_11460 Kluyveromyces waltii Kwal_11460 I 0.000
LALA0_S03e01288g Lachancea lanzarotensis LALA0_S03e01288g I 0.000
NCAS_0G03730 Naumovozyma castellii NCAS_0G03730 I 0.000
NDAI_0G00720 Naumovozyma dairenensis NDAI_0G00720 I 0.000
SAKL0E07216g Lachancea kluyveri SAKL0E07216g I 0.000
Scas_Contig695.2 Saccharomyces castellii Scas_Contig695.2 I 0.000
TBLA_0B06050 Tetrapisispora blattae TBLA_0B06050 I 0.000
TDEL_0G02330 Torulaspora delbrueckii TDEL_0G02330 I 0.000
TPHA_0G00820 Tetrapisispora phaffii TPHA_0G00820 N 0.000
CRZ1 Saccharomyces cerevisiae YNL027W D 0.000
ZBAI_00257 Zygosaccharomyces bailii ZBAI_00257 I 0.000
ZBAI_05417 Zygosaccharomyces bailii ZBAI_05417 I 0.000
ZYRO0A02288g Zygosaccharomyces rouxii ZYRO0A02288g I 0.000