Ciclev10022057m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10022057m.g T286623_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB15
M07084_2.00
Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH

DRKTWGGTGRDDNDDNNDNNN
Dap-seq
OMalley et al.(2016)
ATY19_col_a
0.750 0.785
MYB15
M02699_2.00
Arabidopsis thaliana
CCACCTACCSBBG

CVVSGGTAGGTGG
SELEX
Mathelier et al.(2014)
MA0574.1
0.750 0.785
MYB15
M11041_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB15_01
0.750 0.785
MYB15
M11042_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB15_Q2
0.750 0.785
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH

DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.726 0.753
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN

NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.726 0.753
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH

DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.710 0.731
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH

DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.710 0.731
AtMYB10
M07081_2.00
Arabidopsis thaliana
YYYACCWAMCHHHHNH

DNDDDDGKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB10_col_a
0.704 0.688
AtMYB10
M07082_2.00
Arabidopsis thaliana
NYYYACCWAMCHHH

DDDGKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB10_colamp_a
0.704 0.688
AtMYB41
M07109_2.00
Arabidopsis thaliana
DHDBBYYACCTAMYW

WRKTAGGTRRVVHDH
Dap-seq
OMalley et al.(2016)
MYB41_col_a
0.666 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10022057m Myb 14 61
Ciclev10022057m Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

434 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000016347 Ailuropoda melanoleuca ENSAMEG00000016347 I 0.000
Alligator_sinensis_CCG003072.1 Alligator sinensis Alligator_sinensis_CCG003072.1 I 0.000
ENSACAG00000003946 Anolis carolinensis ENSACAG00000003946 I 0.000
ENSBTAP00000044267-D1 Bos grunniens ENSBTAP00000044267-D1 I 0.000
IRF9 Bos taurus ENSBTAG00000005816 I 0.000
IRF9 Callithrix jacchus ENSCJAG00000007065 I 0.000
IRF9 Canis familiaris ENSCAFG00000012007 I 0.000
IRF9 Cavia porcellus ENSCPOG00000026474 I 0.000
ENSCSAG00000016071 Chlorocebus sabaeus ENSCSAG00000016071 I 0.000
IRF9 Equus caballus ENSECAG00000024429 I 0.000
IRF9 Felis catus ENSFCAG00000018849 I 0.000
IRF9 Gorilla gorilla ENSGGOG00000016046 I 0.000
IRF9 Homo sapiens ENSG00000213928 D 0.000
ENSSTOG00000023450 Ictidomys tridecemlineatus ENSSTOG00000023450 I 0.000
IRF9 Loxodonta africana ENSLAFG00000026182 I 0.000
ENSP00000380073 Macaca fascicularis ENSP00000380073 I 0.000
ENSMEUG00000010784 Macropus eugenii ENSMEUG00000010784 I 0.000
IRF9 Monodelphis domestica ENSMODG00000003368 I 0.000
ENSMPUG00000005961 Mustela putorius furo ENSMPUG00000005961 I 0.000
Irf9 Mus musculus ENSMUSG00000002325 D 0.000
Myotis_brandtii_IRF9_10003711 Myotis brandtii Myotis_brandtii_IRF9_10003711 I 0.000
IRF9 Myotis lucifugus ENSMLUG00000025255 I 0.000
ENSNLEG00000015294 Nomascus leucogenys ENSNLEG00000015294 I 0.000
IRF9 Ochotona princeps ENSOPRG00000018909 D 0.000
Ogr03980 Ophisaurus gracilis Ogr03980 I 0.000
ENSONIG00000006624 Oreochromis niloticus ENSONIG00000006624 I 0.000
IRF9 Oryctolagus cuniculus ENSOCUG00000028186 I 0.000
irf9 Oryzias latipes ENSORLG00000013335 I 0.000
IRF9 Otolemur garnettii ENSOGAG00000026670 I 0.000
ENSOARG00000019201 Ovis aries ENSOARG00000019201 I 0.000
IRF9 Pan troglodytes ENSPTRG00000034494 I 0.000
ENSPFOG00000021810 Poecilia formosa ENSPFOG00000021810 I 0.000
Pvit_14926 Pogona vitticeps Pvit_14926 I 0.000
ENSPPYG00000005686 Pongo abelii ENSPPYG00000005686 I 0.000
IRF9 Procavia capensis ENSPCAG00000015500 I 0.000
IRF9 Pteropus vampyrus ENSPVAG00000007716 I 0.000
Irf9 Rattus norvegicus ENSRNOG00000019478 I 0.000
ENSSHAG00000001872 Sarcophilus harrisii ENSSHAG00000001872 I 0.000
IRF9 Sus scrofa ENSSSCG00000002002 D 0.000
irf9 Takifugu rubripes ENSTRUG00000017722 I 0.000
ENSTSYG00000007445 Tarsius syrichta ENSTSYG00000007445 I 0.000
irf9 Tetraodon nigroviridis ENSTNIG00000008698 I 0.000
IRF9 Tursiops truncatus ENSTTRG00000008624 I 0.000