Ciclev10029989m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10029989m.g T286666_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN

NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.891 0.957
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN

NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.870 0.915
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT

ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.870 0.915
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH

DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.814 0.894
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN

NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.692 0.787
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.680 0.702
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.680 0.702
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN

NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.680 0.681
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH

DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.680 0.681
KAN4
M00881_2.00
Arabidopsis thaliana
NWNRTBCNN

NNGVAYNWN
PBM
Franco-Zorrilla et al.(2014)
KAN4
0.664 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10029989m Myb 72 123

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

561 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF460 Callithrix jacchus ENSCJAG00000000026 I 0.000
ENSCSAG00000001644 Chlorocebus sabaeus ENSCSAG00000001644 I 0.000
ZNF543 Gorilla gorilla ENSGGOG00000009753 I 0.000
ZNF543 Macaca mulatta ENSMMUG00000019286 I 0.000
ENSNLEG00000010929 Nomascus leucogenys ENSNLEG00000010929 I 0.000
ENSP00000322545 Macaca fascicularis ENSP00000322545 I 0.000
ENSPANG00000001783 Papio anubis ENSPANG00000001783 I 0.000
ENSPPYG00000010461 Pongo abelii ENSPPYG00000010461 I 0.000
ZNF543 Pan troglodytes ENSPTRG00000011549 I 0.000