Ciclev10031405m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10031405m.g T286676_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.810 0.879
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.773 0.846
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.773 0.846
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.773 0.846
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10031405m Myb 22 67
Ciclev10031405m Myb 73 117
Ciclev10031544m Myb 22 67
Ciclev10031544m Myb 73 117

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.909
Ca_18779 Cicer arietinum Ca_18779 I 0.902
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.902
PK05123.1 Cannabis sativa PK05123.1 I 0.893
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.888
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.872
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.872
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.872
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.872
MDP0000165523 Malus domestica MDP0000165523 I 0.872
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.872
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.865
Pm006532 Prunus mume Pm006532 I 0.865
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.865
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.865
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.863
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.863
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.863
MDP0000210970 Malus domestica MDP0000210970 I 0.857
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.856
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.856
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.855
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.855
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.853
29736.m002013 Ricinus communis 29736.m002013 I 0.852
TCM_011776 Theobroma cacao TCM_011776 I 0.842
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.839
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.839
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.838
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.836
Cla010333 Citrullus lanatus Cla010333 I 0.836
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.826
MYB124 Arabidopsis thaliana AT1G14350 D 0.810
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.795
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.795
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.795
Bra019658 Brassica rapa Bra019658 I 0.793
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.793
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.790
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.788
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.788
mgf009409m Mimulus guttatus mgf009409m I 0.787
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.786
Bo5g019500 Brassica oleracea Bo5g019500 I 0.784
Bo2g136560 Brassica oleracea Bo2g136560 I 0.783
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.778
Bra024804 Brassica rapa Bra024804 I 0.774
Bo7g080730 Brassica oleracea Bo7g080730 I 0.774
MYB88 Arabidopsis thaliana AT2G02820 D 0.773
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.773
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.773
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.761
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.761
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.752
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.752
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.752
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.748
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.704
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.704
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.704
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I 0.702
Si029124m.g Setaria italica Si029124m.g I 0.702
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.700
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.694
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.694
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.694
OS07G0627300 Oryza sativa OS07G0627300 I 0.694
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.694
OBART07G22930 Oryza barthii OBART07G22930 I 0.694
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.694
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.694
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.693
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I 0.691
OB07G28520 Oryza brachyantha OB07G28520 I 0.690
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.685