estExt_Genemark1.C_60286 (Coccomyxa subellipsoidea C169)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 estExt_Genemark1.C_60286 T286716_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CDC5
M02698_2.00
Arabidopsis thaliana
NVCGCTGAGBN

NVCTCAGCGBN
SELEX
Mathelier et al.(2014)
MA0579.1
0.844 0.967
CDC5
M11037_2.00
Arabidopsis thaliana
NVCGCTGAGBN

NVCTCAGCGBN
Transfac
Matys et al.(2006)
P$CDC5_01
0.844 0.967
CDC5L
M11049_2.00
Homo sapiens
GWKTTAAYRTAD

HTAYRTTAAMWC
Transfac
Matys et al.(2006)
V$CDC5_01
0.790 0.880
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
65754 Myb 7 53
65754 Myb 59 103

Links

Other Myb/SANT family TFs
Other Coccomyxa subellipsoidea C169 TFs

589 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
P93392_TOBAC Nicotiana tabacum P93392_TOBAC D 0.000
Ca_07754 Cicer arietinum Ca_07754 I 0.000
Ca_23170 Cicer arietinum Ca_23170 I 0.000
Cla006080 Citrullus lanatus Cla006080 I 0.000
Cla007697 Citrullus lanatus Cla007697 I 0.000
Cla021850 Citrullus lanatus Cla021850 I 0.000
Pm009382 Prunus mume Pm009382 I 0.000
Pm020604 Prunus mume Pm020604 I 0.000
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.000
29584.m000234 Ricinus communis 29584.m000234 I 0.000
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.000
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.000
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.000
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.000
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.000
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.000
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.000
TRIUR3_28710 Triticum urartu TRIUR3_28710 I 0.000
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.000
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.000
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.000
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.000
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.000
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.000
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.000
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.000
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.000
Si002845m.g Setaria italica Si002845m.g I 0.000
Si031079m.g Setaria italica Si031079m.g I 0.000
TCM_026233 Theobroma cacao TCM_026233 I 0.000
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.000
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.000
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I 0.000
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.000
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.000
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.000
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.000
mgf018693m Mimulus guttatus mgf018693m I 0.000
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.000
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.000
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.000
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I 0.000
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I 0.000
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.000
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I 0.000
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I 0.000
Pavir.Ib02796 Panicum virgatum Pavir.Ib02796 I 0.000
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.000
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.000
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.000
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.000
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.000
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.000
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.000
MDP0000322279 Malus domestica MDP0000322279 I 0.000
MDP0000246808 Malus domestica MDP0000246808 I 0.000
mgf023600m Mimulus guttatus mgf023600m I 0.000
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.000
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.000
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.000
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.000
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.000
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.000
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.000
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.000
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.000
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.000
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.000
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.000
MDP0000127134 Malus domestica MDP0000127134 I 0.000
MDP0000167207 Malus domestica MDP0000167207 I 0.000
MDP0000235313 Malus domestica MDP0000235313 I 0.000
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.000
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.000
OMERI03G05920 Oryza meridionalis OMERI03G05920 I 0.000
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.000
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.000
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.000
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.000
LPERR02G14620 Leersia perrieri LPERR02G14620 I 0.000
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.000
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.000
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.000
OBART03G06100 Oryza barthii OBART03G06100 I 0.000
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I 0.000
Bra021594 Brassica rapa Bra021594 I 0.000
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I 0.000
OMERI04G24480 Oryza meridionalis OMERI04G24480 I 0.000
MDP0000447570 Malus domestica MDP0000447570 I 0.000
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.000
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.000
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.000
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.000
BGIOSGA011326 Oryza indica BGIOSGA011326 I 0.000
BGIOSGA014134 Oryza indica BGIOSGA014134 I 0.000
BGIOSGA032849 Oryza indica BGIOSGA032849 I 0.000
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.000
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.000
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I 0.000
F775_25471 Aegilops tauschii F775_25471 I 0.000
F775_26238 Aegilops tauschii F775_26238 I 0.000
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.000
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.000
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.000
OMERI10G05820 Oryza meridionalis OMERI10G05820 I 0.000
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.000
OGLUM04G28860 Oryza glumaepatula OGLUM04G28860 I 0.000
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.000
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.000
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.000
Ca_12081 Cicer arietinum Ca_12081 I 0.000
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.000
OS03G0183300 Oryza sativa OS03G0183300 I 0.000
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I 0.000
OS01G0313300 Oryza sativa OS01G0313300 I 0.000
ORUFI10G09060 Oryza rufipogon ORUFI10G09060 I 0.000
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I 0.000
ONIVA10G08250 Oryza nivara ONIVA10G08250 I 0.000
ORUFI04G30650 Oryza rufipogon ORUFI04G30650 I 0.000
ONIVA03G06110 Oryza nivara ONIVA03G06110 I 0.000
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.000
OS10G0390800 Oryza sativa OS10G0390800 I 0.000
ONIVA04G27460 Oryza nivara ONIVA04G27460 I 0.000
OS04G0669200 Oryza sativa OS04G0669200 I 0.000
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N 0.000
OS03G0341000 Oryza sativa OS03G0341000 N 0.000
OS07G0674800 Oryza sativa OS07G0674800 N 0.000
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N 0.000
BGIOSGA012597 Oryza indica BGIOSGA012597 N 0.000
ONIVA03G06100 Oryza nivara ONIVA03G06100 N 0.000
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.000
ONIVA03G17860 Oryza nivara ONIVA03G17860 N 0.000
BGIOSGA023726 Oryza indica BGIOSGA023726 N 0.000
Pavir.J12680 Panicum virgatum Pavir.J12680 N 0.000
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N 0.000
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N 0.000
OMERI03G15020 Oryza meridionalis OMERI03G15020 N 0.000
AC206951.3_FG016 Zea mays AC206951.3_FG016 N 0.000
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N 0.000
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N 0.000
ONIVA07G25780 Oryza nivara ONIVA07G25780 N 0.000
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N 0.000
OBART07G26160 Oryza barthii OBART07G26160 N 0.000
OPUNC03G16250 Oryza punctata OPUNC03G16250 N 0.000
LPERR03G14670 Leersia perrieri LPERR03G14670 N 0.000
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.000
OPUNC07G24590 Oryza punctata OPUNC07G24590 N 0.000
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N 0.000
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N 0.000
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N 0.000
GRMZM2G125460 Zea mays GRMZM2G125460 N 0.000
OMERI07G22780 Oryza meridionalis OMERI07G22780 N 0.000