CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.B03417
(
Eucalyptus grandis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Eucgr.B03417
T286774_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.812
0.901
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.785
0.868
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.785
0.868
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.785
0.868
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.B03417.1
Myb
21
66
VTWSQEEDDILREQIGIHGTENWSIIASKFKDKTTRQCRRRWYTYL
Eucgr.B03417.1
Myb
72
116
KGGWSPEEDVLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Eucgr.B03417.2
Myb
21
66
VTWSQEEDDILREQIGIHGTENWSIIASKFKDKTTRQCRRRWYTYL
Eucgr.B03417.2
Myb
72
116
KGGWSPEEDVLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Eucgr.B03417.3
Myb
21
66
VTWSQEEDDILREQIGIHGTENWSIIASKFKDKTTRQCRRRWYTYL
Eucgr.B03417.3
Myb
72
116
KGGWSPEEDVLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Eucalyptus grandis
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.888
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.888
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.882
PK05123.1
Cannabis sativa
PK05123.1
I
0.882
Ca_18779
Cicer arietinum
Ca_18779
I
0.882
29736.m002013
Ricinus communis
29736.m002013
I
0.863
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.859
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.859
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.852
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.852
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.852
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.852
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.852
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.852
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.852
MDP0000165523
Malus domestica
MDP0000165523
I
0.852
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.852
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.848
Cla010333
Citrullus lanatus
Cla010333
I
0.848
Pm006532
Prunus mume
Pm006532
I
0.844
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.844
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.844
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.844
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.843
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.842
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.837
MDP0000210970
Malus domestica
MDP0000210970
I
0.836
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.835
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.827
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.827
TCM_011776
Theobroma cacao
TCM_011776
I
0.822
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.818
MYB124
Arabidopsis thaliana
AT1G14350
D
0.812
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.802
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.800
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.800
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.797
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.797
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.797
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.795
Bra019658
Brassica rapa
Bra019658
I
0.795
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.795
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.794
mgf009409m
Mimulus guttatus
mgf009409m
I
0.789
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.788
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.785
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.785
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.785
MYB88
Arabidopsis thaliana
AT2G02820
D
0.785
Bra024804
Brassica rapa
Bra024804
I
0.785
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.780
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.763
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.763
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.763
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.763
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.763
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.728
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.689
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.683
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.683
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.683
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.683
OS07G0627300
Oryza sativa
OS07G0627300
I
0.683
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.683
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.683
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.683
OBART07G22930
Oryza barthii
OBART07G22930
I
0.683
Si029124m.g
Setaria italica
Si029124m.g
I
0.682
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.682
OB07G28520
Oryza brachyantha
OB07G28520
I
0.678
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.674
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.674
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.674
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.672
GSMUA_Achr6G10650_001
Musa acuminata
GSMUA_Achr6G10650_001
I
0.671