Eucgr.B03417 (Eucalyptus grandis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Eucgr.B03417 T286774_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN

NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.812 0.901
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH

DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.785 0.868
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN

NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.785 0.868
MYB88
M11038_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.785 0.868
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B03417.1 Myb 21 66
Eucgr.B03417.1 Myb 72 116
Eucgr.B03417.2 Myb 21 66
Eucgr.B03417.2 Myb 72 116
Eucgr.B03417.3 Myb 21 66
Eucgr.B03417.3 Myb 72 116

Links

Other Myb/SANT family TFs
Other Eucalyptus grandis TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29736.m002013 Ricinus communis 29736.m002013 I 0.863
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.763
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.827
MYB124 Arabidopsis thaliana AT1G14350 D 0.812
MYB88 Arabidopsis thaliana AT2G02820 D 0.785
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.683
Bo2g136560 Brassica oleracea Bo2g136560 I 0.794
Bo5g019500 Brassica oleracea Bo5g019500 I 0.795
Bo7g080730 Brassica oleracea Bo7g080730 I 0.785
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.785
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.797
Bra019658 Brassica rapa Bra019658 I 0.795
Bra024804 Brassica rapa Bra024804 I 0.785
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.763
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.797
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.797
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.763
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.852
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.852
Ca_18779 Cicer arietinum Ca_18779 I 0.882
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.888
Cla010333 Citrullus lanatus Cla010333 I 0.848
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.848
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.837
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.844
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.788
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.785
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.852
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.852
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.835
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.843
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.844
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.818
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.674
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.728
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I 0.671
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.800
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.800
MDP0000165523 Malus domestica MDP0000165523 I 0.852
MDP0000210970 Malus domestica MDP0000210970 I 0.836
mgf009409m Mimulus guttatus mgf009409m I 0.789
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.882
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.842
OB07G28520 Oryza brachyantha OB07G28520 I 0.678
OBART07G22930 Oryza barthii OBART07G22930 I 0.683
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.683
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.674
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.888
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.683
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.683
OS07G0627300 Oryza sativa OS07G0627300 I 0.683
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I 0.682
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.672
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.689
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.763
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.859
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.763
PK05123.1 Cannabis sativa PK05123.1 I 0.882
Pm006532 Prunus mume Pm006532 I 0.844
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.852
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.852
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.844
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.852
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.852
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.674
Si029124m.g Setaria italica Si029124m.g I 0.682
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.780
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.859
TCM_011776 Theobroma cacao TCM_011776 I 0.822
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.802
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.795
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.683
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.683
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.683
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.827