Eucgr.C00865 (Eucalyptus grandis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Eucgr.C00865 T286790_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.741 0.745
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR

YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.741 0.745
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN

NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.741 0.745
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH

DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.741 0.745
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN

NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.737 0.809
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY

RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.709 0.766
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN

NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.709 0.766
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.692 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.C00865.1 Myb 5 57
Eucgr.C00865.2 Myb 5 57
Eucgr.C00865.3 Myb 5 57

Links

Other Myb/SANT family TFs
Other Eucalyptus grandis TFs

Invalid Input OrderBy

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action