CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.G02522
(
Eucalyptus grandis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Eucgr.G02522
T286892_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.757
0.857
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.738
0.824
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.738
0.824
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.738
0.824
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.G02522.1
Myb
24
69
VTWSQQEDDILREQITIHGTDNWVIIASKFKDKTARQCRRRWYTYL
Eucgr.G02522.1
Myb
75
119
KGGWSPEEDTLLCEAQKIFGNRWTEISKVVAGRTDNAVKNRFTTL
Eucgr.G02522.2
Myb
24
69
VTWSQQEDDILREQITIHGTDNWVIIASKFKDKTARQCRRRWYTYL
Eucgr.G02522.2
Myb
75
119
KGGWSPEEDTLLCEAQKIFGNRWTEISKVVAGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Eucalyptus grandis
TFs
75 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.837
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.826
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.826
Ca_18779
Cicer arietinum
Ca_18779
I
0.826
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.826
PK05123.1
Cannabis sativa
PK05123.1
I
0.826
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.818
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.818
29736.m002013
Ricinus communis
29736.m002013
I
0.807
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.804
Pm006532
Prunus mume
Pm006532
I
0.804
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.804
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.796
MDP0000165523
Malus domestica
MDP0000165523
I
0.796
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.796
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.796
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.796
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.796
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.796
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.796
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.796
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.796
Cla010333
Citrullus lanatus
Cla010333
I
0.792
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.792
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.788
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.786
MDP0000210970
Malus domestica
MDP0000210970
I
0.781
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.779
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.772
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.771
TCM_011776
Theobroma cacao
TCM_011776
I
0.766
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.762
MYB124
Arabidopsis thaliana
AT1G14350
D
0.757
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.755
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.755
Bra024804
Brassica rapa
Bra024804
I
0.754
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.754
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.744
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.744
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.741
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.741
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.741
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.740
Bra019658
Brassica rapa
Bra019658
I
0.740
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.740
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.740
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.738
MYB88
Arabidopsis thaliana
AT2G02820
D
0.738
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.738
mgf009409m
Mimulus guttatus
mgf009409m
I
0.733
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.732
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.731
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.723
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.723
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.717
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.717
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.711
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.689
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.689
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.689
OBART07G22930
Oryza barthii
OBART07G22930
I
0.689
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.689
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.689
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.689
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.689
OS07G0627300
Oryza sativa
OS07G0627300
I
0.689
Si029124m.g
Setaria italica
Si029124m.g
I
0.688
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.688
OB07G28520
Oryza brachyantha
OB07G28520
I
0.685
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.680
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.680
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.680
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.678
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.664