CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_19.216
(
Carica papaya
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
evm.TU.supercontig_19.216
T287089_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.796
0.871
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.796
0.871
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.796
0.871
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN
NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.686
0.806
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.671
0.828
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_19.216
Myb
121
168
GVPWTEDEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYY
Links
Other
Myb/SANT
family TFs
Other
Carica papaya
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_19.217
Carica papaya
evm.TU.supercontig_19.217
I
0.874
Bo5g136680
Brassica oleracea
Bo5g136680
I
0.812
Thhalv10021322m.g
Eutrema salsugineum
Thhalv10021322m.g
I
0.812
Bra034853
Brassica rapa
Bra034853
I
0.801
AT3G11280
Arabidopsis thaliana
AT3G11280
D
0.796
Bra034173
Brassica rapa
Bra034173
I
0.796
Ciclev10032309m.g
Citrus clementina
Ciclev10032309m.g
I
0.793
cassava1257.valid.m1
Manihot esculenta
cassava1257.valid.m1
I
0.790
POPTR_0010s20040
Populus trichocarpa
POPTR_0010s20040
I
0.789
SapurV1A.0262s0080
Salix purpurea
SapurV1A.0262s0080
I
0.789
Bostr.19424s1061
Boechera stricta
Bostr.19424s1061
I
0.785
Gorai.012G075600
Gossypium raimondii
Gorai.012G075600
I
0.781
Bo1g141120
Brassica oleracea
Bo1g141120
I
0.779
fgenesh2_kg.3__1170__AT3G11280.1
Arabidopsis lyrata
fgenesh2_kg.3__1170__AT3G11280.1
I
0.776
orange1.1g023196m.g
Citrus sinensis
orange1.1g023196m.g
I
0.776
Solyc05g052610.2
Solanum lycopersicum
Solyc05g052610.2
I
0.775
VIT_13s0019g03370
Vitis vinifera
VIT_13s0019g03370
I
0.775
PGSC0003DMG400027126
Solanum tuberosum
PGSC0003DMG400027126
I
0.775
29610.m000410
Ricinus communis
29610.m000410
I
0.771
cassava26873.m1
Manihot esculenta
cassava26873.m1
I
0.765
Cagra.1655s0043
Capsella grandiflora
Cagra.1655s0043
I
0.765
Carubv10014411m.g
Capsella rubella
Carubv10014411m.g
I
0.765
mgf010347m
Mimulus guttatus
mgf010347m
I
0.764
POPTR_0008s06450
Populus trichocarpa
POPTR_0008s06450
I
0.759
MTR_5g081860
Medicago truncatula
MTR_5g081860
I
0.759
GLYMA02G42140
Glycine max
GLYMA02G42140
I
0.756
GLYMA14G06750
Glycine max
GLYMA14G06750
I
0.756
TCM_042604
Theobroma cacao
TCM_042604
I
0.748
gene20912-v1.0-hybrid
Fragaria vesca
gene20912-v1.0-hybrid
I
0.742
GLYMA18G03430
Glycine max
GLYMA18G03430
I
0.740
GLYMA11G34930
Glycine max
GLYMA11G34930
I
0.740
Lus10014837.g
Linum usitatissimum
Lus10014837.g
I
0.735
Ca_12513
Cicer arietinum
Ca_12513
I
0.735
PK15104.1
Cannabis sativa
PK15104.1
I
0.729
SapurV1A.0709s0190
Salix purpurea
SapurV1A.0709s0190
I
0.724
PGSC0003DMG400020730
Solanum tuberosum
PGSC0003DMG400020730
I
0.721
Bo9g176900
Brassica oleracea
Bo9g176900
I
0.716
Pm018878
Prunus mume
Pm018878
I
0.716
PRUPE_ppa018139mg
Prunus persica
PRUPE_ppa018139mg
I
0.716
Solyc03g096350.2
Solanum lycopersicum
Solyc03g096350.2
I
0.713
Lus10009884.g
Linum usitatissimum
Lus10009884.g
I
0.708
Lus10028264.g
Linum usitatissimum
Lus10028264.g
I
0.703
Bra009134
Brassica rapa
Bra009134
I
0.701
Cla004397
Citrullus lanatus
Cla004397
I
0.700
POPTR_0001s25590
Populus trichocarpa
POPTR_0001s25590
I
0.697
MDP0000277813
Malus domestica
MDP0000277813
I
0.687
Cla018399
Citrullus lanatus
Cla018399
I
0.686
PK27693.1
Cannabis sativa
PK27693.1
D
0.686
Aquca_009_00736
Aquilegia coerulea
Aquca_009_00736
I
0.683
Cucsa.067080
Cucumis sativus
Cucsa.067080
I
0.679
Cucsa.164580
Cucumis sativus
Cucsa.164580
I
0.678
gene18815-v1.0-hybrid
Fragaria vesca
gene18815-v1.0-hybrid
I
0.677
POPTR_0009s04730
Populus trichocarpa
POPTR_0009s04730
I
0.675
Thhalv10014370m.g
Eutrema salsugineum
Thhalv10014370m.g
I
0.675
Cla018243
Citrullus lanatus
Cla018243
I
0.675
AT5G05790
Arabidopsis thaliana
AT5G05790
D
0.671
scaffold_600551.1
Arabidopsis lyrata
scaffold_600551.1
I
0.671
Bostr.13129s0394
Boechera stricta
Bostr.13129s0394
I
0.671
Carubv10001695m.g
Capsella rubella
Carubv10001695m.g
I
0.671
Cagra.5131s0007
Capsella grandiflora
Cagra.5131s0007
I
0.671
Eucgr.G03029
Eucalyptus grandis
Eucgr.G03029
I
0.671
evm.TU.supercontig_1130.1
Carica papaya
evm.TU.supercontig_1130.1
I
0.669
mgf022442m
Mimulus guttatus
mgf022442m
I
0.669
Ca_14247
Cicer arietinum
Ca_14247
I
0.663
Aquca_004_00289
Aquilegia coerulea
Aquca_004_00289
I
0.663
MDP0000142580
Malus domestica
MDP0000142580
I
0.662
MDP0000221993
Malus domestica
MDP0000221993
I
0.662
Cucsa.139090
Cucumis sativus
Cucsa.139090
I
0.662
Cla013553
Citrullus lanatus
Cla013553
I
0.662
Gorai.006G180900
Gossypium raimondii
Gorai.006G180900
I
0.661