CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_19.216
(
Carica papaya
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
evm.TU.supercontig_19.216
T287089_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.796
0.871
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.796
0.871
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.796
0.871
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN
NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.686
0.806
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.671
0.828
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_19.216
Myb
121
168
GVPWTEDEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYY
Links
Other
Myb/SANT
family TFs
Other
Carica papaya
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy