CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_36.134
(
Carica papaya
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
evm.TU.supercontig_36.134
T287140_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.825
0.935
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.825
0.935
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.781
0.849
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.781
0.849
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.769
0.828
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.769
0.828
MYB106
M11040_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.767
0.796
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.746
0.753
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.708
0.839
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.675
0.796
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.675
0.796
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.669
0.731
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.669
0.731
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.663
0.753
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.663
0.753
MYB15
M07084_2.00
Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN
Dap-seq
OMalley et al.(2016)
ATY19_col_a
0.662
0.753
MYB15
M02699_2.00
Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG
SELEX
Mathelier et al.(2014)
MA0574.1
0.662
0.753
MYB15
M11041_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB15_01
0.662
0.753
MYB15
M11042_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB15_Q2
0.662
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_36.134
Myb
14
61
KGPWTPEEDQILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL
evm.model.supercontig_36.134
Myb
67
112
RGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL
Links
Other
Myb/SANT
family TFs
Other
Carica papaya
TFs
835 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy