gene00431-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene00431-v1.0-hybrid T287215_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.875 0.924
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.875 0.924
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.858 0.913
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.821 0.870
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.821 0.870
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.816 0.848
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.816 0.848
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.805 0.859
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.798 0.848
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.798 0.848
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.798 0.848
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.797 0.880
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.797 0.880
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.797 0.880
AtMYB81
M07049_2.00
Arabidopsis thaliana
VTAACNGHWWH

DWWDCNGTTAB
Dap-seq
OMalley et al.(2016)
MYB81_col_a
0.668 0.761
AtMYB81
M07050_2.00
Arabidopsis thaliana
DHHNYAACBGHWWH

DWWDCVGTTRNDDH
Dap-seq
OMalley et al.(2016)
MYB81_colamp_a
0.668 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna00431.1-v1.0-hybrid Myb 172 219
mrna00431.1-v1.0-hybrid Myb 225 269

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

301 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R005676 Calypte anna Aan_R005676 I 0.000
Afo_R004510 Aptenodytes forsteri Afo_R004510 I 0.000
Afo_R004730 Aptenodytes forsteri Afo_R004730 I 0.000
Alligator_sinensis_CCG009650.1 Alligator sinensis Alligator_sinensis_CCG009650.1 I 0.000
Alligator_sinensis_CCG009650.2 Alligator sinensis Alligator_sinensis_CCG009650.2 I 0.000
Brh_R008527 Buceros rhinoceros Brh_R008527 I 0.000
Cmyd_10014527 Chelonia mydas Cmyd_10014527 I 0.000
ENSACAG00000006345 Anolis carolinensis ENSACAG00000006345 I 0.000
BATF Anolis carolinensis ENSACAG00000016951 I 0.000
ENSAMEG00000001350 Ailuropoda melanoleuca ENSAMEG00000001350 I 0.000
ENSAMEG00000018338 Ailuropoda melanoleuca ENSAMEG00000018338 I 0.000
ENSAMXG00000010496 Astyanax mexicanus ENSAMXG00000010496 I 0.000
ENSAMXG00000013814 Astyanax mexicanus ENSAMXG00000013814 I 0.000
ENSAPLG00000011595 Anas platyrhynchos ENSAPLG00000011595 I 0.000
ENSAPLG00000012252 Anas platyrhynchos ENSAPLG00000012252 I 0.000
BATF3 Bos taurus ENSBTAG00000011982 I 0.000
BATF Bos taurus ENSBTAG00000025405 I 0.000
BATF Canis familiaris ENSCAFG00000017044 I 0.000
BATF3 Canis familiaris ENSCAFG00000032161 I 0.000
BATF Choloepus hoffmanni ENSCHOG00000005766 I 0.000
BATF3 Callithrix jacchus ENSCJAG00000015732 I 0.000
BATF Callithrix jacchus ENSCJAG00000020651 I 0.000
ENSCPOG00000015436 Cavia porcellus ENSCPOG00000015436 I 0.000
ENSCPOG00000021172 Cavia porcellus ENSCPOG00000021172 I 0.000
ENSCSAG00000012114 Chlorocebus sabaeus ENSCSAG00000012114 I 0.000
ENSCSAG00000015412 Chlorocebus sabaeus ENSCSAG00000015412 I 0.000
batf Danio rerio ENSDARG00000011818 I 0.000
batf3 Danio rerio ENSDARG00000042577 I 0.000
BATF Dasypus novemcinctus ENSDNOG00000047121 I 0.000
ENSDORG00000006028 Dipodomys ordii ENSDORG00000006028 I 0.000
ENSDORG00000012889 Dipodomys ordii ENSDORG00000012889 I 0.000
BATF3 Equus caballus ENSECAG00000011042 I 0.000
BATF Equus caballus ENSECAG00000016422 I 0.000
BATF3 Echinops telfairi ENSETEG00000010953 I 0.000
ENSFALG00000006360 Ficedula albicollis ENSFALG00000006360 I 0.000
ENSFALG00000012404 Ficedula albicollis ENSFALG00000012404 I 0.000
BATF Felis catus ENSFCAG00000014194 I 0.000
BATF3 Felis catus ENSFCAG00000014614 I 0.000
BATF3 Homo sapiens ENSG00000123685 D 0.000
BATF Homo sapiens ENSG00000156127 D 0.000
batf Gasterosteus aculeatus ENSGACG00000010594 I 0.000
ENSGALG00000009816 Gallus gallus ENSGALG00000009816 I 0.000
ENSGALG00000010323 Gallus gallus ENSGALG00000010323 I 0.000
BATF Gorilla gorilla ENSGGOG00000002267 I 0.000
BATF3 Gorilla gorilla ENSGGOG00000023446 I 0.000
ENSGMOG00000011150 Gadus morhua ENSGMOG00000011150 I 0.000
ENSLACG00000002955 Latimeria chalumnae ENSLACG00000002955 I 0.000
ENSLACG00000017801 Latimeria chalumnae ENSLACG00000017801 I 0.000
BATF Loxodonta africana ENSLAFG00000011315 I 0.000
BATF3 Loxodonta africana ENSLAFG00000027351 I 0.000
ENSLOCG00000000836 Lepisosteus oculatus ENSLOCG00000000836 I 0.000
ENSLOCG00000010533 Lepisosteus oculatus ENSLOCG00000010533 I 0.000
ENSMEUG00000002840 Macropus eugenii ENSMEUG00000002840 I 0.000
BATF Meleagris gallopavo ENSMGAG00000012758 I 0.000
ENSMICG00000014634 Microcebus murinus ENSMICG00000014634 I 0.000
ENSMICG00000016046 Microcebus murinus ENSMICG00000016046 I 0.000
BATF Myotis lucifugus ENSMLUG00000013360 I 0.000
BATF3 Myotis lucifugus ENSMLUG00000025827 I 0.000
BATF Macaca mulatta ENSMMUG00000003834 I 0.000
BATF3 Macaca mulatta ENSMMUG00000015056 I 0.000
BATF3 Monodelphis domestica ENSMODG00000003055 I 0.000
BATF Monodelphis domestica ENSMODG00000005905 I 0.000
ENSMPUG00000009143 Mustela putorius furo ENSMPUG00000009143 I 0.000
ENSMPUG00000013390 Mustela putorius furo ENSMPUG00000013390 I 0.000
Batf3 Mus musculus ENSMUSG00000026630 D 0.000
Batf Mus musculus ENSMUSG00000034266 D 0.000
ENSNLEG00000002945 Nomascus leucogenys ENSNLEG00000002945 I 0.000
ENSNLEG00000016492 Nomascus leucogenys ENSNLEG00000016492 I 0.000
BATF3 Ornithorhynchus anatinus ENSOANG00000008505 I 0.000
ENSOARG00000001812 Ovis aries ENSOARG00000001812 I 0.000
ENSOARG00000010458 Ovis aries ENSOARG00000010458 I 0.000
BATF Oryctolagus cuniculus ENSOCUG00000026625 I 0.000
BATF3 Otolemur garnettii ENSOGAG00000008684 I 0.000
BATF Otolemur garnettii ENSOGAG00000010133 I 0.000
ENSONIG00000015290 Oreochromis niloticus ENSONIG00000015290 I 0.000
BATF Ochotona princeps ENSOPRG00000012041 I 0.000
BATF3 Ochotona princeps ENSOPRG00000013285 I 0.000
batf Oryzias latipes ENSORLG00000009061 I 0.000
ENSP00000243440 Macaca fascicularis ENSP00000243440 I 0.000
ENSP00000243440-D1 Bos grunniens ENSP00000243440-D1 I 0.000
ENSP00000286639 Macaca fascicularis ENSP00000286639 I 0.000
ENSP00000286639-D1 Bos grunniens ENSP00000286639-D1 I 0.000
ENSPANG00000018466 Papio anubis ENSPANG00000018466 I 0.000
ENSPANG00000021772 Papio anubis ENSPANG00000021772 I 0.000
ENSPFOG00000007199 Poecilia formosa ENSPFOG00000007199 I 0.000
ENSPFOG00000017107 Poecilia formosa ENSPFOG00000017107 I 0.000
ENSPPYG00000000234 Pongo abelii ENSPPYG00000000234 I 0.000
ENSPPYG00000006005 Pongo abelii ENSPPYG00000006005 I 0.000
ENSPSIG00000017659 Pelodiscus sinensis ENSPSIG00000017659 I 0.000
ENSPSIG00000017969 Pelodiscus sinensis ENSPSIG00000017969 I 0.000
BATF3 Pan troglodytes ENSPTRG00000001965 I 0.000
BATF Pan troglodytes ENSPTRG00000006556 I 0.000
BATF Pteropus vampyrus ENSPVAG00000000674 I 0.000
BATF3 Pteropus vampyrus ENSPVAG00000011828 I 0.000
Batf3 Rattus norvegicus ENSRNOG00000003716 I 0.000
Batf Rattus norvegicus ENSRNOG00000008588 I 0.000
ENSSHAG00000011300 Sarcophilus harrisii ENSSHAG00000011300 I 0.000
ENSSHAG00000017205 Sarcophilus harrisii ENSSHAG00000017205 I 0.000
ENSSSCG00000015594 Sus scrofa ENSSSCG00000015594 I 0.000
BATF3 Sus scrofa ENSSSCG00000026587 I 0.000
BATF Sus scrofa ENSSSCG00000030582 I 0.000
ENSSTOG00000007136 Ictidomys tridecemlineatus ENSSTOG00000007136 I 0.000
BATF3 Tupaia belangeri ENSTBEG00000012725 I 0.000
BATF Tupaia belangeri ENSTBEG00000014581 I 0.000
BATF3 Taeniopygia guttata ENSTGUG00000003049 I 0.000
BATF Taeniopygia guttata ENSTGUG00000012220 I 0.000
batf Tetraodon nigroviridis ENSTNIG00000016349 I 0.000
batf Takifugu rubripes ENSTRUG00000009390 I 0.000
ENSTSYG00000005296 Tarsius syrichta ENSTSYG00000005296 I 0.000
BATF Tursiops truncatus ENSTTRG00000009370 I 0.000
BATF3 Tursiops truncatus ENSTTRG00000016583 I 0.000
BATF Vicugna pacos ENSVPAG00000003093 I 0.000
ENSXMAG00000003951 Xiphophorus maculatus ENSXMAG00000003951 I 0.000
Gfo_R010938 Geospiza fortis Gfo_R010938 I 0.000
Gfo_R012905 Geospiza fortis Gfo_R012905 I 0.000
Myotis_brandtii_BATF_10012950 Myotis brandtii Myotis_brandtii_BATF_10012950 I 0.000
Ogr08031 Ophisaurus gracilis Ogr08031 I 0.000
Pvit_01217 Pogona vitticeps Pvit_01217 I 0.000
Tal_R011063 Tyto alba Tal_R011063 I 0.000
batf Xenopus tropicalis XB-GENE-6258076 I 0.000