gene01013-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene01013-v1.0-hybrid T287219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.764 0.839
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.764 0.839
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.729 0.839
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.729 0.839
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.720 0.774
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.720 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01013.1-v1.0-hybrid Myb 22 68
mrna01013.1-v1.0-hybrid Myb 74 119

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

376 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
lin-28 Drosophila melanogaster FBgn0035626 D 0.000
CpipJ_CPIJ011213 Culex pipiens CpipJ_CPIJ011213 I 0.000
ADIR007387 Anopheles dirus ADIR007387 I 0.000
ACUA024423 Anopheles culicifacies ACUA024423 I 0.000
ACOM039486 Anopheles coluzzii ACOM039486 I 0.000
ACHR009791 Anopheles christyi ACHR009791 I 0.000
AATE020348 Anopheles atroparvus AATE020348 I 0.000
AARA008465 Anopheles arabiensis AARA008465 I 0.000
AALB005062 Anopheles albimanus AALB005062 I 0.000
AEPI008253 Anopheles epiroticus AEPI008253 I 0.000
AFAF013794 Anopheles farauti AFAF013794 I 0.000
AFUN002605 Anopheles funestus AFUN002605 I 0.000
AMEM002179 Anopheles merus AMEM002179 I 0.000
AMIN007802 Anopheles minimus AMIN007802 I 0.000
AQUA004698 Anopheles quadriannulatus AQUA004698 I 0.000
ASIS012373 Anopheles sinensis ASIS012373 I 0.000
ASTEI02701 Anopheles stephensi ASTEI02701 I 0.000
LLOJ008847 Lutzomyia longipalpis LLOJ008847 I 0.000
LCUP008192 Lucilia cuprina LCUP008192 I 0.000
HHAL010561-PA Halyomorpha halys HHAL010561-PA I 0.000
tetur15g00620 Tetranychus urticae tetur15g00620 I 0.000
AGAP006591 Anopheles gambiae AGAP006591 I 0.000
BGIBMGA000377 Bombyx mori BGIBMGA000377 I 0.000
CPIJ011213 Culex quinquefasciatus CPIJ011213 I 0.000
GA14466 Drosophila pseudoobscura FBgn0074494 I 0.000
HMEL007073 Heliconius melpomene HMEL007073 I 0.000
KGM_16662 Danaus plexippus KGM_16662 I 0.000
MDOA004026 Musca domestica MDOA004026 I 0.000
MCINX009795 Melitaea cinxia MCINX009795 I 0.000
TC014742 Tribolium castaneum TC014742 I 0.000
RPRC012403 Rhodnius prolixus RPRC012403 I 0.000
SMAR011791 Strigamia maritima SMAR011791 I 0.000
AAEL004259 Aedes aegypti AAEL004259 N 0.000
CapteG179303 Capitella teleta CapteG179303 N 0.000
CGI_10016910 Crassostrea gigas CGI_10016910 N 0.000
DAPPUDRAFT_52316 Daphnia pulex DAPPUDRAFT_52316 N 0.000
HelroG163427 Helobdella robusta HelroG163427 N 0.000
LotgiG108358 Lottia gigantea LotgiG108358 N 0.000