gene01013-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene01013-v1.0-hybrid T287219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.764 0.839
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.764 0.839
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.729 0.839
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.729 0.839
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.720 0.774
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.720 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01013.1-v1.0-hybrid Myb 22 68
mrna01013.1-v1.0-hybrid Myb 74 119

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

376 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_05073 Aegilops tauschii F775_05073 I 0.000
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.000
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.000
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.000
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.000
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.000
Bo4g182600 Brassica oleracea Bo4g182600 N 0.000
Bra021911 Brassica rapa Bra021911 N 0.000
PK22924.1 Cannabis sativa PK22924.1 N 0.000
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.000
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.000
Ca_05164 Cicer arietinum Ca_05164 N 0.000
Ca_05162 Cicer arietinum Ca_05162 N 0.000
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.000
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.000
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.000
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.000
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.000
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.000
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.000
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.000
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.000
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.000
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.000
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.000
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.000
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.000
MDP0000695104 Malus domestica MDP0000695104 N 0.000
MDP0000392251 Malus domestica MDP0000392251 N 0.000
MDP0000170945 Malus domestica MDP0000170945 N 0.000
MDP0000143506 Malus domestica MDP0000143506 N 0.000
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.000
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.000
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.000
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.000
mgf009922m Mimulus guttatus mgf009922m N 0.000
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.000
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.000
OBART01G25720 Oryza barthii OBART01G25720 N 0.000
OB01G34910 Oryza brachyantha OB01G34910 I 0.000
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.000
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.000
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.000
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.000
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.000
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.000
OS01G0666200 Oryza sativa OS01G0666200 N 0.000
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.000
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.000
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.000
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.000
29693.m002035 Ricinus communis 29693.m002035 N 0.000
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.000
Si003021m.g Setaria italica Si003021m.g N 0.000
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.000
TCM_029514 Theobroma cacao TCM_029514 N 0.000
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.000
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.000