CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene01457-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene01457-v1.0-hybrid
T287221_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB80
M07142_2.00
Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MS188_col_a
0.825
0.914
MYB80
M07143_2.00
Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR
Dap-seq
OMalley et al.(2016)
MS188_colamp_a
0.825
0.914
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna01457.1-v1.0-hybrid
Myb
14
61
RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL
mrna01457.1-v1.0-hybrid
Myb
67
112
HGQFSDAEEQTIVKLHSVVGNRWYLIAAQLPGRTDNDVKNHWNTKL
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AtMYB103
Vitis vinifera
VIT_19s0015g01280
I
0.902
GLYMA18G07960
Glycine max
GLYMA18G07960
I
0.902
PRUPE_ppa021719mg
Prunus persica
PRUPE_ppa021719mg
I
0.902
cassava33918.m1
Manihot esculenta
cassava33918.m1
I
0.902
Ca_17657
Cicer arietinum
Ca_17657
I
0.902
Gorai.009G454000
Gossypium raimondii
Gorai.009G454000
I
0.902
Cucsa.041880
Cucumis sativus
Cucsa.041880
I
0.902
POPTR_0011s17060
Populus trichocarpa
POPTR_0011s17060
I
0.893
Cla004524
Citrullus lanatus
Cla004524
I
0.892
Ciclev10008921m.g
Citrus clementina
Ciclev10008921m.g
I
0.889
MTR_3g461490
Medicago truncatula
MTR_3g461490
I
0.887
TCM_030529
Theobroma cacao
TCM_030529
I
0.885
POPTR_0001s47430
Populus trichocarpa
POPTR_0001s47430
I
0.883
OPUNC04G13560
Oryza punctata
OPUNC04G13560
I
0.881
ORUFI04G17000
Oryza rufipogon
ORUFI04G17000
I
0.881
ORGLA04G0126700
Oryza glaberrima
ORGLA04G0126700
I
0.881
Traes_2BL_361925B62
Triticum aestivum
Traes_2BL_361925B62
I
0.881
Pavir.Ga01401
Panicum virgatum
Pavir.Ga01401
I
0.881
TRIUR3_35325
Triticum urartu
TRIUR3_35325
I
0.881
ONIVA04G13800
Oryza nivara
ONIVA04G13800
I
0.881
Sb06g019650
Sorghum bicolor
Sb06g019650
I
0.881
Si012130m.g
Setaria italica
Si012130m.g
I
0.881
BGIOSGA014912
Oryza indica
BGIOSGA014912
I
0.881
F775_22620
Aegilops tauschii
F775_22620
I
0.881
OMERI04G13500
Oryza meridionalis
OMERI04G13500
I
0.881
GRMZM2G173633
Zea mays
GRMZM2G173633
I
0.881
OGLUM04G15520
Oryza glumaepatula
OGLUM04G15520
I
0.881
OB04G23000
Oryza brachyantha
OB04G23000
I
0.881
evm.TU.supercontig_12.83
Carica papaya
evm.TU.supercontig_12.83
I
0.878
LPERR04G12420
Leersia perrieri
LPERR04G12420
I
0.872
Aquca_005_00315
Aquilegia coerulea
Aquca_005_00315
I
0.870
Solyc10g005760.1
Solanum lycopersicum
Solyc10g005760.1
I
0.867
PGSC0003DMG400008687
Solanum tuberosum
PGSC0003DMG400008687
I
0.867
SapurV1A.0395s0050
Salix purpurea
SapurV1A.0395s0050
I
0.865
Eucgr.F03656
Eucalyptus grandis
Eucgr.F03656
I
0.862
SapurV1A.0338s0180
Salix purpurea
SapurV1A.0338s0180
I
0.861
BGIOSGA030830
Oryza indica
BGIOSGA030830
I
0.861
BRADI5G13041
Brachypodium distachyon
BRADI5G13041
I
0.859
Bra035604
Brassica rapa
Bra035604
I
0.843
Traes_2DL_A03AB7608
Triticum aestivum
Traes_2DL_A03AB7608
I
0.836
Bostr.26833s0652
Boechera stricta
Bostr.26833s0652
I
0.835
Bra002847
Brassica rapa
Bra002847
I
0.825
Cagra.3745s0008
Capsella grandiflora
Cagra.3745s0008
I
0.825
Al_scaffold_0008_2049
Arabidopsis lyrata
Al_scaffold_0008_2049
I
0.825
Thhalv10015622m.g
Eutrema salsugineum
Thhalv10015622m.g
I
0.825
Carubv10027619m.g
Capsella rubella
Carubv10027619m.g
I
0.825
MYB80
Arabidopsis thaliana
AT5G56110
D
0.825
Bo2g036530
Brassica oleracea
Bo2g036530
I
0.823
AtMYB103
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001268
I
0.821
Bo9g123440
Brassica oleracea
Bo9g123440
I
0.815
Pavir.J28142
Panicum virgatum
Pavir.J28142
I
0.765
Solyc07g054840.2
Solanum lycopersicum
Solyc07g054840.2
I
0.673
PGSC0003DMG400018331
Solanum tuberosum
PGSC0003DMG400018331
I
0.673
Solyc02g091980.1
Solanum lycopersicum
Solyc02g091980.1
I
0.672
PGSC0003DMG400021401
Solanum tuberosum
PGSC0003DMG400021401
I
0.672
POPTR_0011s04000
Populus trichocarpa
POPTR_0011s04000
N
0.670
Lus10013830.g
Linum usitatissimum
Lus10013830.g
I
0.670
Lus10026543.g
Linum usitatissimum
Lus10026543.g
I
0.670
gw1.65.181.1
Physcomitrella patens
gw1.65.181.1
N
0.669
estExt_Genewise1.C_360117
Physcomitrella patens
estExt_Genewise1.C_360117
N
0.669
Thhalv10027463m.g
Eutrema salsugineum
Thhalv10027463m.g
I
0.666
Gorai.006G162800
Gossypium raimondii
Gorai.006G162800
I
0.666
Bra026281
Brassica rapa
Bra026281
I
0.666
Bo1g051220
Brassica oleracea
Bo1g051220
I
0.666
Cla007838
Citrullus lanatus
Cla007838
I
0.664
Solyc10g008700.1
Solanum lycopersicum
Solyc10g008700.1
I
0.664
Cucsa.148040
Cucumis sativus
Cucsa.148040
I
0.664
PGSC0003DMG400026628
Solanum tuberosum
PGSC0003DMG400026628
I
0.664
MTR_4g097570
Medicago truncatula
MTR_4g097570
I
0.663
GRMZM2G104789
Zea mays
GRMZM2G104789
I
0.662
Lus10011606.g
Linum usitatissimum
Lus10011606.g
I
0.662