gene05518-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene05518-v1.0-hybrid T287246_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN

NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.817 0.851
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH

DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.817 0.851
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.787 0.830
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.757 0.851
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.757 0.851
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.752 0.787
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.752 0.787
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.752 0.787
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.752 0.787
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.732 0.745
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.732 0.745
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.727 0.830
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH

DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.711 0.681
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.695 0.723
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.695 0.723
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.695 0.723
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.688 0.702
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB

VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.686 0.787
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD

HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.686 0.787
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.686 0.723
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN

NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.672 0.681
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.668 0.681
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.668 0.681
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.668 0.681
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN

NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.666 0.681
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT

ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.666 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05518.1-v1.0-hybrid Myb 257 308

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

960 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.000
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.000
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.000
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.000
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.000
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.000
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.000
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.000
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.000
ERF010 Arabidopsis thaliana AT5G67190 D 0.000
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.000
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.000
ERF011 Arabidopsis thaliana AT3G50260 D 0.000
ERF008 Arabidopsis thaliana AT2G23340 D 0.000
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.000
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.000
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.000
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.000
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.000
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.000
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.000
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.000
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.000
Bo7g118430 Brassica oleracea Bo7g118430 I 0.000
Bo9g020380 Brassica oleracea Bo9g020380 I 0.000
Bo7g063980 Brassica oleracea Bo7g063980 I 0.000
Bo4g151460 Brassica oleracea Bo4g151460 I 0.000
Bo1g004940 Brassica oleracea Bo1g004940 I 0.000
Bo8g079660 Brassica oleracea Bo8g079660 I 0.000
Bra011744 Brassica rapa Bra011744 I 0.000
Bra012140 Brassica rapa Bra012140 I 0.000
Bra014056 Brassica rapa Bra014056 I 0.000
Bra017811 Brassica rapa Bra017811 I 0.000
Bra032173 Brassica rapa Bra032173 I 0.000
Bra036061 Brassica rapa Bra036061 I 0.000
Bra037124 Brassica rapa Bra037124 I 0.000
PK15612.1 Cannabis sativa PK15612.1 I 0.000
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.000
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.000
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.000
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.000
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.000
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.000
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.000
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.000
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.000
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.000
Ca_01556 Cicer arietinum Ca_01556 I 0.000
Ca_02170 Cicer arietinum Ca_02170 I 0.000
Cla022937 Citrullus lanatus Cla022937 I 0.000
Cla020961 Citrullus lanatus Cla020961 I 0.000
Cla014175 Citrullus lanatus Cla014175 I 0.000
Cla020550 Citrullus lanatus Cla020550 I 0.000
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.000
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.000
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.000
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.000
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.000
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.000
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.000
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.000
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.000
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.000
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.000
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.000
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.000
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.000
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.000
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.000
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.000
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.000
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.000
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.000
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.000
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.000
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.000
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.000
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.000
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.000
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.000
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.000
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.000
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.000
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.000
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.000
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.000
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.000
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.000
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.000
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.000
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.000
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.000
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.000
MDP0000125673 Malus domestica MDP0000125673 I 0.000
MDP0000179962 Malus domestica MDP0000179962 I 0.000
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.000
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.000
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.000
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.000
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.000
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.000
mgf025363m Mimulus guttatus mgf025363m I 0.000
mgf000289m Mimulus guttatus mgf000289m I 0.000
mgf006561m Mimulus guttatus mgf006561m I 0.000
mgf021115m Mimulus guttatus mgf021115m I 0.000
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.000
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.000
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.000
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.000
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.000
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.000
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.000
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.000
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.000
OBART06G04460 Oryza barthii OBART06G04460 I 0.000
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.000
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.000
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.000
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.000
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.000
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.000
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.000
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.000
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.000
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.000
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.000
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.000
OS04G0648900 Oryza sativa OS04G0648900 I 0.000
OS06G0166400 Oryza sativa OS06G0166400 I 0.000
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.000
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.000
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.000
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.000
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.000
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.000
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.000
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.000
Pm005312 Prunus mume Pm005312 N 0.000
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.000
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.000
30170.m013843 Ricinus communis 30170.m013843 I 0.000
28718.m000038 Ricinus communis 28718.m000038 I 0.000
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.000
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.000
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.000
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.000
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.000
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.000
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.000
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.000
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.000
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.000
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.000
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.000
TCM_033791 Theobroma cacao TCM_033791 I 0.000
TCM_000669 Theobroma cacao TCM_000669 I 0.000
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.000
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.000
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.000
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.000
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.000
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.000
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.000