gene09683-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene09683-v1.0-hybrid T287281_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.693 0.742
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.693 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna09683.1-v1.0-hybrid Myb 15 62
mrna09683.1-v1.0-hybrid Myb 68 113

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa024805mg Prunus persica PRUPE_ppa024805mg N 0.857
Pm026334 Prunus mume Pm026334 N 0.854
TCM_022293 Theobroma cacao TCM_022293 I 0.729
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.718
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.718
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.718
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I 0.715
Gorai.009G413600 Gossypium raimondii Gorai.009G413600 I 0.707
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I 0.704
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.703
AtMYB27 Vitis vinifera VIT_08s0007g04830 I 0.697
Bra028550 Brassica rapa Bra028550 I 0.695
MYB27 Arabidopsis thaliana AT3G53200 D 0.693
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.692
Bo6g067190 Brassica oleracea Bo6g067190 I 0.691
PK10274.1 Cannabis sativa PK10274.1 I 0.690
TCM_018971 Theobroma cacao TCM_018971 I 0.685
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.684
Pm015392 Prunus mume Pm015392 I 0.680
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.676
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.676
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.671
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.666
MDP0000286143 Malus domestica MDP0000286143 I 0.664
orange1.1g044161m.g Citrus sinensis orange1.1g044161m.g I 0.662
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I 0.661
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.661