gene15401-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene15401-v1.0-hybrid T287316_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.676 0.723
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.676 0.723
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.676 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna15401.1-v1.0-hybrid Myb 191 238

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra007892 Brassica rapa Bra007892 I 0.704
Bo2g066810 Brassica oleracea Bo2g066810 I 0.704
Solyc12g008800.1 Solanum lycopersicum Solyc12g008800.1 I 0.692
PGSC0003DMG400000340 Solanum tuberosum PGSC0003DMG400000340 I 0.692
Eucgr.D00726 Eucalyptus grandis Eucgr.D00726 I 0.686
Eucgr.C03026 Eucalyptus grandis Eucgr.C03026 I 0.686
SapurV1A.0161s0200 Salix purpurea SapurV1A.0161s0200 I 0.685
POPTR_0015s08020 Populus trichocarpa POPTR_0015s08020 I 0.683
GRMZM2G034110 Zea mays GRMZM2G034110 I 0.681
Pavir.Ib02319 Panicum virgatum Pavir.Ib02319 I 0.681
MYBS3 Oryza sativa OS10G0561400 I 0.681
ORGLA10G0136800 Oryza glaberrima ORGLA10G0136800 I 0.681
ORUFI10G19730 Oryza rufipogon ORUFI10G19730 I 0.681
Sb01g029020 Sorghum bicolor Sb01g029020 I 0.681
Si036696m.g Setaria italica Si036696m.g I 0.681
TRIUR3_06499 Triticum urartu TRIUR3_06499 I 0.681
Pavir.Ia02215 Panicum virgatum Pavir.Ia02215 I 0.681
Traes_1DL_8398893D8 Triticum aestivum Traes_1DL_8398893D8 I 0.681
Traes_1BL_B7F04D24D Triticum aestivum Traes_1BL_B7F04D24D I 0.681
Traes_1AL_297FBF3A3 Triticum aestivum Traes_1AL_297FBF3A3 I 0.681
OPUNC10G16890 Oryza punctata OPUNC10G16890 I 0.681
BRADI3G33400 Brachypodium distachyon BRADI3G33400 I 0.681
OB10G25650 Oryza brachyantha OB10G25650 I 0.681
MLOC_10528 Hordeum vulgare MLOC_10528 I 0.681
ONIVA10G21060 Oryza nivara ONIVA10G21060 I 0.681
GRMZM5G813892 Zea mays GRMZM5G813892 I 0.681
OBART10G18550 Oryza barthii OBART10G18550 I 0.681
LPERR10G14380 Leersia perrieri LPERR10G14380 I 0.681
OMERI08G00440 Oryza meridionalis OMERI08G00440 I 0.681
OLONG_012642 Oryza longistaminata OLONG_012642 I 0.681
OGLUM10G18630 Oryza glumaepatula OGLUM10G18630 I 0.681
VIT_18s0001g01170 Vitis vinifera VIT_18s0001g01170 I 0.680
evm.TU.supercontig_13.247 Carica papaya evm.TU.supercontig_13.247 I 0.678
Cagra.1961s0096 Capsella grandiflora Cagra.1961s0096 I 0.676
Carubv10011841m.g Capsella rubella Carubv10011841m.g I 0.676
AT1G19000 Arabidopsis thaliana AT1G19000 D 0.676
fgenesh2_kg.1__2077__AT1G19000.2 Arabidopsis lyrata fgenesh2_kg.1__2077__AT1G19000.2 I 0.676
TRIUR3_35146 Triticum urartu TRIUR3_35146 I 0.674
F775_13323 Aegilops tauschii F775_13323 I 0.674
Traes_3AS_4DF357170 Triticum aestivum Traes_3AS_4DF357170 I 0.674
Sb03g003100 Sorghum bicolor Sb03g003100 I 0.674
MLOC_70777 Hordeum vulgare MLOC_70777 I 0.674
Si002353m.g Setaria italica Si002353m.g I 0.674
BRADI2G05760 Brachypodium distachyon BRADI2G05760 I 0.674
GRMZM2G049695 Zea mays GRMZM2G049695 I 0.674
Pavir.Ea00361 Panicum virgatum Pavir.Ea00361 I 0.674
TRAES3BF096900180CFD_g Triticum aestivum TRAES3BF096900180CFD_g I 0.674
GSMUA_Achr5G13550_001 Musa acuminata GSMUA_Achr5G13550_001 I 0.672
GSMUA_Achr2G01080_001 Musa acuminata GSMUA_Achr2G01080_001 I 0.672
POPTR_0012s07560 Populus trichocarpa POPTR_0012s07560 I 0.667
POPTR_0001s11730 Populus trichocarpa POPTR_0001s11730 I 0.666
SapurV1A.0094s0580 Salix purpurea SapurV1A.0094s0580 I 0.666