CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene16655-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene16655-v1.0-hybrid
T287319_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CDC5
M02698_2.00
Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN
SELEX
Mathelier et al.(2014)
MA0579.1
0.898
0.989
CDC5
M11037_2.00
Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN
Transfac
Matys et al.(2006)
P$CDC5_01
0.898
0.989
CDC5L
M11049_2.00
Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC
Transfac
Matys et al.(2006)
V$CDC5_01
0.803
0.879
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna16655.1-v1.0-hybrid
Myb
773
819
GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWL
mrna16655.1-v1.0-hybrid
Myb
847
890
TEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLL
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
556 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy