CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene18756-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene18756-v1.0-hybrid
T287335_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.758
0.839
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.698
0.731
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.683
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna18756.1-v1.0-hybrid
Myb
43
89
RGVWSQEEDRILSRLVSKFGARNWTLIARGIPGRCGKSCRLRWFNQL
mrna18756.1-v1.0-hybrid
Myb
95
140
RKPFSAEEDRMIISAHAIHGNKWSAIAKLLPGRTDNAIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA01G26650
Glycine max
GLYMA01G26650
I
0.787
GLYMA03G15810
Glycine max
GLYMA03G15810
I
0.778
Gorai.011G278500
Gossypium raimondii
Gorai.011G278500
I
0.765
GSMUA_Achr5G28780_001
Musa acuminata
GSMUA_Achr5G28780_001
I
0.765
TCM_042629
Theobroma cacao
TCM_042629
I
0.765
GSMUA_Achr6G33470_001
Musa acuminata
GSMUA_Achr6G33470_001
I
0.765
Si001686m.g
Setaria italica
Si001686m.g
I
0.762
Gorai.006G179700
Gossypium raimondii
Gorai.006G179700
I
0.760
Pm018862
Prunus mume
Pm018862
I
0.759
PK07741.1
Cannabis sativa
PK07741.1
D
0.758
mgf015566m
Mimulus guttatus
mgf015566m
I
0.758
Carubv10017397m.g
Capsella rubella
Carubv10017397m.g
I
0.757
Cagra.0003s0013
Capsella grandiflora
Cagra.0003s0013
I
0.757
PGSC0003DMG400020338
Solanum tuberosum
PGSC0003DMG400020338
I
0.752
Solyc09g011780.2
Solanum lycopersicum
Solyc09g011780.2
I
0.752
Pm002576
Prunus mume
Pm002576
I
0.751
TCM_021796
Theobroma cacao
TCM_021796
I
0.751
PRUPE_ppa006851mg
Prunus persica
PRUPE_ppa006851mg
I
0.751
cassava1242.valid.m1
Manihot esculenta
cassava1242.valid.m1
I
0.749
e_gw1.53.214.1
Physcomitrella patens
e_gw1.53.214.1
I
0.746
e_gw1.72.10.1
Physcomitrella patens
e_gw1.72.10.1
I
0.746
VIT_08s0007g01540
Vitis vinifera
VIT_08s0007g01540
I
0.743
mgf018580m
Mimulus guttatus
mgf018580m
I
0.740
MDP0000284922
Malus domestica
MDP0000284922
I
0.739
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.738
Bo3g062160
Brassica oleracea
Bo3g062160
I
0.736
MLOC_10322
Hordeum vulgare
MLOC_10322
I
0.734
chr2.LjT13M01.180.nd
Lotus japonicus
chr2.LjT13M01.180.nd
I
0.734
TRAES3BF039800050CFD_g
Triticum aestivum
TRAES3BF039800050CFD_g
I
0.734
PK12959.1
Cannabis sativa
PK12959.1
I
0.734
Bra007186
Brassica rapa
Bra007186
I
0.733
Bostr.20505s0177
Boechera stricta
Bostr.20505s0177
I
0.733
Thhalv10010431m.g
Eutrema salsugineum
Thhalv10010431m.g
I
0.733
Eucgr.J00250
Eucalyptus grandis
Eucgr.J00250
I
0.733
GSMUA_Achr9G03720_001
Musa acuminata
GSMUA_Achr9G03720_001
I
0.733
27798.m000612
Ricinus communis
27798.m000612
I
0.732
Cla018417
Citrullus lanatus
Cla018417
I
0.732
Cucsa.066910
Cucumis sativus
Cucsa.066910
I
0.732
MTR_4g019370
Medicago truncatula
MTR_4g019370
I
0.732
Thhalv10021963m.g
Eutrema salsugineum
Thhalv10021963m.g
I
0.731
Pavir.J13677
Panicum virgatum
Pavir.J13677
I
0.729
Pavir.Ea03398
Panicum virgatum
Pavir.Ea03398
I
0.729
Sb03g039950
Sorghum bicolor
Sb03g039950
I
0.729
MDP0000478512
Malus domestica
MDP0000478512
I
0.729
GRMZM2G169316
Zea mays
GRMZM2G169316
I
0.729
evm.TU.supercontig_19.238
Carica papaya
evm.TU.supercontig_19.238
I
0.728
MYB109
Arabidopsis lyrata
fgenesh2_kg.5__1999__AT3G55730.1
I
0.727
Bo8g090160
Brassica oleracea
Bo8g090160
I
0.724
MDP0000807341
Malus domestica
MDP0000807341
I
0.723
PGSC0003DMG400027190
Solanum tuberosum
PGSC0003DMG400027190
I
0.723
Eucgr.K03010
Eucalyptus grandis
Eucgr.K03010
I
0.721
GLYMA14G06320
Glycine max
GLYMA14G06320
I
0.718
Lus10028250.g
Linum usitatissimum
Lus10028250.g
I
0.717
Lus10040239.g
Linum usitatissimum
Lus10040239.g
I
0.717
GLYMA14G06870
Glycine max
GLYMA14G06870
I
0.714
Aquca_009_00809
Aquilegia coerulea
Aquca_009_00809
I
0.713
SapurV1A.0709s0060
Salix purpurea
SapurV1A.0709s0060
I
0.711
gene20888-v1.0-hybrid
Fragaria vesca
gene20888-v1.0-hybrid
I
0.708
OMERI01G34370
Oryza meridionalis
OMERI01G34370
I
0.707
OBART01G37390
Oryza barthii
OBART01G37390
I
0.704
BGIOSGA000485
Oryza indica
BGIOSGA000485
I
0.704
OGLUM01G41330
Oryza glumaepatula
OGLUM01G41330
I
0.704
OS01G0850400
Oryza sativa
OS01G0850400
I
0.704
ORGLA01G0312200
Oryza glaberrima
ORGLA01G0312200
I
0.704
ORUFI01G40770
Oryza rufipogon
ORUFI01G40770
I
0.704
OPUNC01G36300
Oryza punctata
OPUNC01G36300
I
0.704
ONIVA01G42300
Oryza nivara
ONIVA01G42300
I
0.704
OLONG_001357
Oryza longistaminata
OLONG_001357
I
0.704
VIT_13s0019g03200
Vitis vinifera
VIT_13s0019g03200
I
0.702
MDP0000203733
Malus domestica
MDP0000203733
I
0.702
MDP0000319124
Malus domestica
MDP0000319124
I
0.702
AtMYB1
Arabidopsis lyrata
scaffold_301043.1
I
0.701
gw1.10.6.1
Physcomitrella patens
gw1.10.6.1
I
0.699
Solyc05g052850.2
Solanum lycopersicum
Solyc05g052850.2
I
0.699
GLYMA02G43280
Glycine max
GLYMA02G43280
I
0.699
MYB1
Arabidopsis thaliana
AT3G09230
D
0.698
TRIUR3_08319
Triticum urartu
TRIUR3_08319
I
0.696
SELMODRAFT_103999
Selaginella moellendorffii
SELMODRAFT_103999
I
0.696
SELMODRAFT_99462
Selaginella moellendorffii
SELMODRAFT_99462
I
0.696
Bo1g144680
Brassica oleracea
Bo1g144680
I
0.696
Bra034057
Brassica rapa
Bra034057
I
0.696
MYB25
Arabidopsis lyrata
Al_scaffold_0004_2572
I
0.695
GLYMA02G42030
Glycine max
GLYMA02G42030
I
0.694
SELMODRAFT_113522
Selaginella moellendorffii
SELMODRAFT_113522
I
0.694
SELMODRAFT_77255
Selaginella moellendorffii
SELMODRAFT_77255
I
0.694
MYB109
Arabidopsis thaliana
AT3G55730
I
0.692
Ciclev10031463m.g
Citrus clementina
Ciclev10031463m.g
I
0.692
orange1.1g012494m.g
Citrus sinensis
orange1.1g012494m.g
I
0.692
Carubv10013882m.g
Capsella rubella
Carubv10013882m.g
I
0.692
Cagra.2515s0014
Capsella grandiflora
Cagra.2515s0014
I
0.692
orange1.1g017566m.g
Citrus sinensis
orange1.1g017566m.g
I
0.691
Bra001323
Brassica rapa
Bra001323
I
0.691
Ciclev10012003m.g
Citrus clementina
Ciclev10012003m.g
I
0.691
SapurV1A.0262s0270
Salix purpurea
SapurV1A.0262s0270
I
0.691
Bostr.23794s0078
Boechera stricta
Bostr.23794s0078
I
0.688
cassava7558.valid.m1
Manihot esculenta
cassava7558.valid.m1
I
0.686
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.684
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.684
OGLUM02G06640
Oryza glumaepatula
OGLUM02G06640
I
0.683
MLOC_7426
Hordeum vulgare
MLOC_7426
I
0.683
ORGLA02G0061500
Oryza glaberrima
ORGLA02G0061500
I
0.683
OS02G0187700
Oryza sativa
OS02G0187700
D
0.683
BRADI3G06470
Brachypodium distachyon
BRADI3G06470
I
0.683
OMERI02G07700
Oryza meridionalis
OMERI02G07700
I
0.683
ORUFI02G06760
Oryza rufipogon
ORUFI02G06760
I
0.683
OPUNC02G05820
Oryza punctata
OPUNC02G05820
I
0.683
ONIVA02G08210
Oryza nivara
ONIVA02G08210
I
0.683
evm.TU.supercontig_56.79
Carica papaya
evm.TU.supercontig_56.79
I
0.680
Bostr.22252s0145
Boechera stricta
Bostr.22252s0145
I
0.678
Bra005006
Brassica rapa
Bra005006
I
0.678
Thhalv10016794m.g
Eutrema salsugineum
Thhalv10016794m.g
I
0.677
evm.TU.supercontig_19.155
Carica papaya
evm.TU.supercontig_19.155
I
0.675
OB01G46120
Oryza brachyantha
OB01G46120
I
0.674
LPERR01G32110
Leersia perrieri
LPERR01G32110
I
0.674
Bo4g025810
Brassica oleracea
Bo4g025810
I
0.673
Cucsa.244650
Cucumis sativus
Cucsa.244650
I
0.670
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.670
F775_09670
Aegilops tauschii
F775_09670
I
0.669
AMTR_s00007p00169630
Amborella trichopoda
AMTR_s00007p00169630
I
0.669
Sb04g005940
Sorghum bicolor
Sb04g005940
I
0.666
Pavir.J23512
Panicum virgatum
Pavir.J23512
I
0.666
LPERR02G05810
Leersia perrieri
LPERR02G05810
I
0.666
GRMZM2G145444
Zea mays
GRMZM2G145444
I
0.666
GRMZM2G078820
Zea mays
GRMZM2G078820
I
0.666
Si017917m.g
Setaria italica
Si017917m.g
I
0.666
Bo7g117880
Brassica oleracea
Bo7g117880
I
0.666
Pavir.Ab00649
Panicum virgatum
Pavir.Ab00649
I
0.666
Si006938m.g
Setaria italica
Si006938m.g
I
0.662
Pavir.Db00693
Panicum virgatum
Pavir.Db00693
I
0.662
GRMZM5G803308
Zea mays
GRMZM5G803308
I
0.662
Pavir.Da00404
Panicum virgatum
Pavir.Da00404
I
0.662
Lus10018936.g
Linum usitatissimum
Lus10018936.g
I
0.661
TCM_033907
Theobroma cacao
TCM_033907
I
0.661
Lus10028638.g
Linum usitatissimum
Lus10028638.g
I
0.661
mgf006151m
Mimulus guttatus
mgf006151m
I
0.661