gene19065-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene19065-v1.0-hybrid T287338_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.732 0.806
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.680 0.710
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.673 0.710
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.673 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19065.1-v1.0-hybrid Myb 14 62
mrna19065.1-v1.0-hybrid Myb 68 113

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK05754.1 Cannabis sativa PK05754.1 I 0.827
GLYMA18G46480 Glycine max GLYMA18G46480 I 0.814
GLYMA09G39721 Glycine max GLYMA09G39721 I 0.814
MTR_7g076740 Medicago truncatula MTR_7g076740 I 0.807
GLYMA03G01540 Glycine max GLYMA03G01540 I 0.803
PRUPE_ppa007268mg Prunus persica PRUPE_ppa007268mg I 0.801
Ca_06226 Cicer arietinum Ca_06226 I 0.801
Pm018056 Prunus mume Pm018056 I 0.801
GLYMA07G07960 Glycine max GLYMA07G07960 I 0.790
TCM_005371 Theobroma cacao TCM_005371 I 0.782
Thhalv10006126m.g Eutrema salsugineum Thhalv10006126m.g I 0.775
AtMYB17 Vitis vinifera VIT_15s0046g03190 I 0.773
MTR_8g031360 Medicago truncatula MTR_8g031360 I 0.771
Ca_13779 Cicer arietinum Ca_13779 I 0.771
orange1.1g021486m.g Citrus sinensis orange1.1g021486m.g I 0.769
Ciclev10021268m.g Citrus clementina Ciclev10021268m.g I 0.769
Gorai.004G157600 Gossypium raimondii Gorai.004G157600 I 0.769
Gorai.001G169700 Gossypium raimondii Gorai.001G169700 I 0.768
Cla021563 Citrullus lanatus Cla021563 I 0.760
Cucsa.258270 Cucumis sativus Cucsa.258270 I 0.760
Bo8g095790 Brassica oleracea Bo8g095790 I 0.758
Bra007588 Brassica rapa Bra007588 I 0.758
cassava25066.valid.m1 Manihot esculenta cassava25066.valid.m1 I 0.757
30174.m009001 Ricinus communis 30174.m009001 I 0.757
SapurV1A.0024s0060 Salix purpurea SapurV1A.0024s0060 I 0.757
Bostr.13158s0117 Boechera stricta Bostr.13158s0117 I 0.754
Eucgr.E00175 Eucalyptus grandis Eucgr.E00175 I 0.750
Eucgr.D02271 Eucalyptus grandis Eucgr.D02271 I 0.748
cassava26282.m1 Manihot esculenta cassava26282.m1 I 0.748
Solyc01g094360.2 Solanum lycopersicum Solyc01g094360.2 I 0.747
Bra003443 Brassica rapa Bra003443 I 0.745
Lus10030378.g Linum usitatissimum Lus10030378.g I 0.745
PGSC0003DMG400000027 Solanum tuberosum PGSC0003DMG400000027 I 0.744
GLYMA12G01960 Glycine max GLYMA12G01960 I 0.744
SapurV1A.0533s0230 Salix purpurea SapurV1A.0533s0230 I 0.742
AtMYB17 Populus trichocarpa POPTR_0014s07700 I 0.742
GLYMA20G29730 Glycine max GLYMA20G29730 I 0.737
GLYMA10G38090 Glycine max GLYMA10G38090 I 0.737
Lus10014784.g Linum usitatissimum Lus10014784.g I 0.735
chr3.CM0127.290.nc Lotus japonicus chr3.CM0127.290.nc I 0.735
AtMYB17 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002102 I 0.732
AtMYB17 Arabidopsis thaliana AT3G61250 D 0.732
Aquca_013_00356 Aquilegia coerulea Aquca_013_00356 I 0.732
cassava40203.m1 Manihot esculenta cassava40203.m1 I 0.731
Carubv10018382m.g Capsella rubella Carubv10018382m.g I 0.729
Bra014446 Brassica rapa Bra014446 I 0.729
MTR_1g100653 Medicago truncatula MTR_1g100653 I 0.729
Cagra.3373s0030 Capsella grandiflora Cagra.3373s0030 I 0.729
Bo6g077600 Brassica oleracea Bo6g077600 I 0.727
Pavir.Da02398 Panicum virgatum Pavir.Da02398 I 0.724
evm.TU.supercontig_18.232 Carica papaya evm.TU.supercontig_18.232 I 0.723
GLYMA11G11570 Glycine max GLYMA11G11570 I 0.723
GSMUA_Achr11G07850_001 Musa acuminata GSMUA_Achr11G07850_001 I 0.723
PGSC0003DMG400021654 Solanum tuberosum PGSC0003DMG400021654 I 0.722
Solyc05g048830.2 Solanum lycopersicum Solyc05g048830.2 I 0.722
VIT_16s0050g00070 Vitis vinifera VIT_16s0050g00070 I 0.720
Ca_11228 Cicer arietinum Ca_11228 I 0.717
MDP0000127521 Malus domestica MDP0000127521 I 0.714
TCM_025488 Theobroma cacao TCM_025488 I 0.710
mgf012840m Mimulus guttatus mgf012840m I 0.710
GLYMA11G01150 Glycine max GLYMA11G01150 I 0.709
GLYMA01G44370 Glycine max GLYMA01G44370 I 0.709
Lus10027459.g Linum usitatissimum Lus10027459.g I 0.708
chr5.CM0148.360.nc Lotus japonicus chr5.CM0148.360.nc I 0.706
Ciclev10020765m.g Citrus clementina Ciclev10020765m.g I 0.704
orange1.1g039198m.g Citrus sinensis orange1.1g039198m.g I 0.704
Ca_11832 Cicer arietinum Ca_11832 I 0.703
GSMUA_Achr11G04090_001 Musa acuminata GSMUA_Achr11G04090_001 I 0.702
GSMUA_AchrUn_randomG02890_001 Musa acuminata GSMUA_AchrUn_randomG02890_001 I 0.696
cassava39451.m1 Manihot esculenta cassava39451.m1 I 0.696
cassava34465.m1 Manihot esculenta cassava34465.m1 I 0.694
Lus10039214.g Linum usitatissimum Lus10039214.g I 0.693
chr1.CM0591.530.nd Lotus japonicus chr1.CM0591.530.nd I 0.692
Traes_2AL_5EE86C5BC Triticum aestivum Traes_2AL_5EE86C5BC I 0.691
MTR_5g007370 Medicago truncatula MTR_5g007370 I 0.691
Cla013211 Citrullus lanatus Cla013211 I 0.690
evm.TU.supercontig_36.134 Carica papaya evm.TU.supercontig_36.134 I 0.690
Ca_04477 Cicer arietinum Ca_04477 I 0.690
Traes_4AL_9BF07972C Triticum aestivum Traes_4AL_9BF07972C I 0.689
SapurV1A.1253s0080 Salix purpurea SapurV1A.1253s0080 I 0.688
POPTR_0012s13240 Populus trichocarpa POPTR_0012s13240 I 0.688
PGSC0003DMG400006408 Solanum tuberosum PGSC0003DMG400006408 I 0.687
Solyc04g074170.1 Solanum lycopersicum Solyc04g074170.1 I 0.687
Lus10036472.g Linum usitatissimum Lus10036472.g I 0.687
Lus10041142.g Linum usitatissimum Lus10041142.g I 0.687
Traes_2DL_25FD0FFB4 Triticum aestivum Traes_2DL_25FD0FFB4 I 0.686
Traes_2DL_6BD0572DF Triticum aestivum Traes_2DL_6BD0572DF I 0.686
LPERR04G19330 Leersia perrieri LPERR04G19330 I 0.686
evm.TU.supercontig_90.68 Carica papaya evm.TU.supercontig_90.68 I 0.685
evm.TU.supercontig_107.48 Carica papaya evm.TU.supercontig_107.48 I 0.683
TRIUR3_31689 Triticum urartu TRIUR3_31689 I 0.683
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I 0.683
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I 0.683
F775_11235 Aegilops tauschii F775_11235 I 0.683
MTR_4g478180 Medicago truncatula MTR_4g478180 I 0.681
GRMZM2G044824 Zea mays GRMZM2G044824 I 0.681
e_gw1.45.189.1 Physcomitrella patens e_gw1.45.189.1 I 0.680
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.680
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.680
Gorai.007G348600 Gossypium raimondii Gorai.007G348600 I 0.680
Gorai.003G054100 Gossypium raimondii Gorai.003G054100 I 0.680
Aquca_005_00496 Aquilegia coerulea Aquca_005_00496 I 0.680
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.680
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.679
Gorai.003G183700 Gossypium raimondii Gorai.003G183700 I 0.679
Aquca_009_00493 Aquilegia coerulea Aquca_009_00493 I 0.678
OBART04G23600 Oryza barthii OBART04G23600 I 0.677
OS04G0593200 Oryza sativa OS04G0593200 I 0.677
ORGLA04G0201500 Oryza glaberrima ORGLA04G0201500 I 0.677
OPUNC04G21140 Oryza punctata OPUNC04G21140 I 0.677
ONIVA04G19830 Oryza nivara ONIVA04G19830 I 0.677
ORUFI04G25320 Oryza rufipogon ORUFI04G25320 I 0.677
OGLUM04G23540 Oryza glumaepatula OGLUM04G23540 I 0.677
BGIOSGA014443 Oryza indica BGIOSGA014443 I 0.677
Traes_2AL_B01AE830F Triticum aestivum Traes_2AL_B01AE830F I 0.676
POPTR_0015s13180 Populus trichocarpa POPTR_0015s13180 I 0.676
F775_02773 Aegilops tauschii F775_02773 I 0.676
Traes_2DL_54D11D5E7 Triticum aestivum Traes_2DL_54D11D5E7 I 0.675
TCM_016551 Theobroma cacao TCM_016551 I 0.675
gene09406-v1.0-hybrid Fragaria vesca gene09406-v1.0-hybrid I 0.675
OB04G30520 Oryza brachyantha OB04G30520 I 0.674
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I 0.674
OPUNC06G00590 Oryza punctata OPUNC06G00590 I 0.673
Cucsa.318610 Cucumis sativus Cucsa.318610 I 0.673
ORUFI06G00810 Oryza rufipogon ORUFI06G00810 I 0.673
MYB92 Arabidopsis thaliana AT5G10280 D 0.673
OS06G0112700 Oryza sativa OS06G0112700 I 0.673
ONIVA06G00830 Oryza nivara ONIVA06G00830 I 0.673
OMERI06G00710 Oryza meridionalis OMERI06G00710 I 0.673
MYB92 Arabidopsis lyrata fgenesh2_kg.6__990__AT5G10280.1 I 0.673
BGIOSGA022168 Oryza indica BGIOSGA022168 I 0.673
OBART06G00820 Oryza barthii OBART06G00820 I 0.673
OGLUM06G00580 Oryza glumaepatula OGLUM06G00580 I 0.673
BGIOSGA022169 Oryza indica BGIOSGA022169 I 0.673
BGIOSGA022174 Oryza indica BGIOSGA022174 I 0.673
Bostr.13175s0070 Boechera stricta Bostr.13175s0070 I 0.673
Traes_4DL_4EE7DFCCD Triticum aestivum Traes_4DL_4EE7DFCCD I 0.672
Pavir.J23197 Panicum virgatum Pavir.J23197 I 0.672
GSMUA_Achr4G19030_001 Musa acuminata GSMUA_Achr4G19030_001 I 0.672
F775_14942 Aegilops tauschii F775_14942 I 0.672
Si006790m.g Setaria italica Si006790m.g I 0.672
BRADI1G51747 Brachypodium distachyon BRADI1G51747 I 0.672
ONIVA08G20680 Oryza nivara ONIVA08G20680 I 0.671
ONIVA06G08940 Oryza nivara ONIVA06G08940 I 0.671
Cucsa.312940 Cucumis sativus Cucsa.312940 I 0.671
GSMUA_Achr5G12230_001 Musa acuminata GSMUA_Achr5G12230_001 I 0.671
OPUNC06G07380 Oryza punctata OPUNC06G07380 I 0.671
Si017785m.g Setaria italica Si017785m.g I 0.671
OMERI08G14710 Oryza meridionalis OMERI08G14710 I 0.671
OGLUM08G19650 Oryza glumaepatula OGLUM08G19650 I 0.671
OGLUM06G08200 Oryza glumaepatula OGLUM06G08200 I 0.671
OB06G17320 Oryza brachyantha OB06G17320 I 0.671
OB08G25790 Oryza brachyantha OB08G25790 I 0.671
OMERI06G09300 Oryza meridionalis OMERI06G09300 I 0.671
Si014103m.g Setaria italica Si014103m.g I 0.671
OBART06G07710 Oryza barthii OBART06G07710 I 0.671
ORGLA06G0073000 Oryza glaberrima ORGLA06G0073000 I 0.671
Pavir.Fb01820 Panicum virgatum Pavir.Fb01820 I 0.671
Cla016484 Citrullus lanatus Cla016484 I 0.671
ORUFI08G20890 Oryza rufipogon ORUFI08G20890 I 0.671
ORGLA08G0162300 Oryza glaberrima ORGLA08G0162300 I 0.671
OS06G0221000 Oryza sativa OS06G0221000 I 0.671
Pavir.Fa00604 Panicum virgatum Pavir.Fa00604 I 0.671
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.670
GSMUA_Achr9G14850_001 Musa acuminata GSMUA_Achr9G14850_001 I 0.670
cassava44382.m1 Manihot esculenta cassava44382.m1 I 0.670
chr2.CM0124.80.nc Lotus japonicus chr2.CM0124.80.nc I 0.670
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.670
Si039538m.g Setaria italica Si039538m.g I 0.670
Traes_2AL_E5B3B79F7 Triticum aestivum Traes_2AL_E5B3B79F7 I 0.669
TCM_015159 Theobroma cacao TCM_015159 I 0.669
GLYMA16G13440 Glycine max GLYMA16G13440 I 0.669
GRMZM2G111045 Zea mays GRMZM2G111045 I 0.669
GRMZM2G040924 Zea mays GRMZM2G040924 I 0.669
Traes_2BL_560CCE975 Triticum aestivum Traes_2BL_560CCE975 I 0.669
Si017934m.g Setaria italica Si017934m.g I 0.669
Pavir.Ab02419 Panicum virgatum Pavir.Ab02419 I 0.669
OB02G32960 Oryza brachyantha OB02G32960 I 0.669
ORUFI02G27000 Oryza rufipogon ORUFI02G27000 I 0.669
Pm025102 Prunus mume Pm025102 I 0.669
TRIUR3_17294 Triticum urartu TRIUR3_17294 I 0.669
OS02G0641900 Oryza sativa OS02G0641900 I 0.669
Sb04g033670 Sorghum bicolor Sb04g033670 I 0.669
PRUPE_ppa011954mg Prunus persica PRUPE_ppa011954mg I 0.669
BGIOSGA008700 Oryza indica BGIOSGA008700 I 0.669
Bo3g005530 Brassica oleracea Bo3g005530 I 0.668
GSMUA_Achr5G23240_001 Musa acuminata GSMUA_Achr5G23240_001 I 0.667
GSMUA_Achr7G18410_001 Musa acuminata GSMUA_Achr7G18410_001 I 0.667
GSMUA_Achr6G02550_001 Musa acuminata GSMUA_Achr6G02550_001 I 0.667
Gorai.008G179600 Gossypium raimondii Gorai.008G179600 I 0.667
Pm002011 Prunus mume Pm002011 I 0.666
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I 0.666
TRIUR3_26633 Triticum urartu TRIUR3_26633 I 0.666
Pavir.Aa01232 Panicum virgatum Pavir.Aa01232 I 0.666
MDP0000320772 Malus domestica MDP0000320772 I 0.666
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I 0.666
SapurV1A.0039s0080 Salix purpurea SapurV1A.0039s0080 I 0.665
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I 0.665
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I 0.665
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I 0.665
PK18231.1 Cannabis sativa PK18231.1 I 0.665
Aquca_010_00195 Aquilegia coerulea Aquca_010_00195 I 0.665
GSMUA_Achr6G04130_001 Musa acuminata GSMUA_Achr6G04130_001 I 0.665
MTR_1g076150 Medicago truncatula MTR_1g076150 I 0.665
Gorai.013G114900 Gossypium raimondii Gorai.013G114900 I 0.665
Bra028593 Brassica rapa Bra028593 I 0.664
MDP0000209761 Malus domestica MDP0000209761 I 0.664
Bo2g009800 Brassica oleracea Bo2g009800 I 0.664
Thhalv10014028m.g Eutrema salsugineum Thhalv10014028m.g I 0.664
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.664
30054.m000809 Ricinus communis 30054.m000809 I 0.664
PK20358.1 Cannabis sativa PK20358.1 I 0.663
VIT_06s0004g00570 Vitis vinifera VIT_06s0004g00570 I 0.663
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.662
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.662
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.662
GRMZM2G159547 Zea mays GRMZM2G159547 I 0.662
MDP0000228252 Malus domestica MDP0000228252 I 0.662
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.662
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.662
Si008086m.g Setaria italica Si008086m.g I 0.662
Sb04g027540 Sorghum bicolor Sb04g027540 I 0.662
MDP0000302984 Malus domestica MDP0000302984 I 0.662
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.662
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.661
ORUFI06G07920 Oryza rufipogon ORUFI06G07920 I 0.661
cassava4659.m1 Manihot esculenta cassava4659.m1 I 0.661
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.661