gene19115-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene19115-v1.0-hybrid T287339_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.664 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19115.1-v1.0-hybrid Myb 63 109
mrna19115.1-v1.0-hybrid Myb 115 161
mrna19115.1-v1.0-hybrid Myb 167 209

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.792
Pm018007 Prunus mume Pm018007 I 0.772
ATMYB3R2 Vitis vinifera VIT_15s0048g02120 N 0.742
evm.TU.supercontig_18.208 Carica papaya evm.TU.supercontig_18.208 N 0.723
TCM_005402 Theobroma cacao TCM_005402 I 0.720
Gorai.008G117400 Gossypium raimondii Gorai.008G117400 N 0.711
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.689
cassava40167.m1 Manihot esculenta cassava40167.m1 I 0.679
ATMYB3R2 Populus trichocarpa POPTR_0014s07520 N 0.679
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.677
SapurV1A.0586s0030 Salix purpurea SapurV1A.0586s0030 N 0.667
SapurV1A.0533s0050 Salix purpurea SapurV1A.0533s0050 N 0.667
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.666
Bo7g115810 Brassica oleracea Bo7g115810 I 0.665
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.664