CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene19641-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene19641-v1.0-hybrid
T287342_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN
NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.773
0.787
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.767
0.745
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.767
0.745
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.714
0.745
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.696
0.766
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna19641.1-v1.0-hybrid
Myb
68
119
RLRWSSDLHRCFVHAVERLGGEDRATPKLILQIMNVKGLTISHVKSHLQMCR
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
415 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy