gene20888-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene20888-v1.0-hybrid T287350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.726 0.806
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.705 0.731
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.673 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20888.1-v1.0-hybrid Myb 34 80
mrna20888.1-v1.0-hybrid Myb 86 131

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.791
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.779
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.779
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.778
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.777
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.774
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.772
MDP0000284922 Malus domestica MDP0000284922 I 0.769
TCM_042629 Theobroma cacao TCM_042629 I 0.769
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.769
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.765
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.765
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.765
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.759
mgf015566m Mimulus guttatus mgf015566m I 0.753
Pm018862 Prunus mume Pm018862 I 0.752
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.751
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.751
Cla018417 Citrullus lanatus Cla018417 I 0.748
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.748
MDP0000807341 Malus domestica MDP0000807341 I 0.746
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.745
27798.m000612 Ricinus communis 27798.m000612 I 0.745
mgf018580m Mimulus guttatus mgf018580m I 0.743
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.739
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.739
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.736
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.736
Si001686m.g Setaria italica Si001686m.g I 0.736
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.736
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.736
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.732
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.732
PK16550.1 Cannabis sativa PK16550.1 I 0.729
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.728
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.728
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.728
PK07741.1 Cannabis sativa PK07741.1 D 0.726
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.725
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.724
MDP0000203733 Malus domestica MDP0000203733 I 0.724
MDP0000319124 Malus domestica MDP0000319124 I 0.724
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.724
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.724
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.723
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.721
PK12959.1 Cannabis sativa PK12959.1 I 0.719
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.717
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.717
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.715
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.715
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.714
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.714
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.713
Pm002576 Prunus mume Pm002576 I 0.712
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.712
TCM_021796 Theobroma cacao TCM_021796 I 0.712
MDP0000298689 Malus domestica MDP0000298689 I 0.712
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.712
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.711
29801.m003096 Ricinus communis 29801.m003096 I 0.711
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.711
MDP0000478512 Malus domestica MDP0000478512 I 0.710
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.708
Pm018951 Prunus mume Pm018951 I 0.707
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.707
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.707
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.706
OS02G0187700 Oryza sativa OS02G0187700 D 0.705
Cla004431 Citrullus lanatus Cla004431 I 0.705
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.705
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.705
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.705
Si017917m.g Setaria italica Si017917m.g I 0.705
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.705
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.705
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.705
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.705
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.705
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.705
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.705
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.705
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.705
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.705
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.705
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.705
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.702
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.702
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.702
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.701
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.701
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.699
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.699
29814.m000736 Ricinus communis 29814.m000736 I 0.698
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.698
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.698
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.696
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.695
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.695
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.694
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.694
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.694
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.693
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.693
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.693
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.693
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.692
Cla013306 Citrullus lanatus Cla013306 I 0.691
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.690
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.688
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.688
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.688
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.688
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.688
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.688
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.688
OB01G46120 Oryza brachyantha OB01G46120 I 0.688
OS01G0850400 Oryza sativa OS01G0850400 I 0.688
OBART01G37390 Oryza barthii OBART01G37390 I 0.688
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.688
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.688
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.688
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.686
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.685
Ca_12468 Cicer arietinum Ca_12468 I 0.685
PK01153.1 Cannabis sativa PK01153.1 I 0.685
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.685
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.685
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.683
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.683
MYB25 Arabidopsis thaliana AT2G39880 I 0.681
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.681
mgf025567m Mimulus guttatus mgf025567m I 0.681
Bo3g062160 Brassica oleracea Bo3g062160 I 0.680
Sb0088s002210 Sorghum bicolor Sb0088s002210 N 0.680
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.679
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.679
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.679
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.679
Pm021211 Prunus mume Pm021211 I 0.679
Si032789m.g Setaria italica Si032789m.g I 0.679
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.679
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.678
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.678
Si006938m.g Setaria italica Si006938m.g I 0.678
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.678
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.678
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.677
Bra007186 Brassica rapa Bra007186 I 0.677
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.677
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.676
TCM_042474 Theobroma cacao TCM_042474 I 0.676
OB09G10200 Oryza brachyantha OB09G10200 I 0.675
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.675
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.675
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.675
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.675
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.675
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.675
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.675
OBART09G00310 Oryza barthii OBART09G00310 I 0.675
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.675
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.675
OS09G0106700 Oryza sativa OS09G0106700 I 0.675
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.675
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.675
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.675
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.674
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.673
MYB1 Arabidopsis thaliana AT3G09230 D 0.673
mgf020432m Mimulus guttatus mgf020432m I 0.673
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.672
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.670
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.670
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.669
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.668
Bo8g090160 Brassica oleracea Bo8g090160 I 0.668
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.668
Bra005006 Brassica rapa Bra005006 I 0.667
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.666
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.666
Traes_4BL_545A5716E Triticum aestivum Traes_4BL_545A5716E I 0.666
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.666
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.666
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.666
Traes_4DL_D41CB81EA Triticum aestivum Traes_4DL_D41CB81EA I 0.666
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.666
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.666
MYB109 Arabidopsis thaliana AT3G55730 I 0.666
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.665
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.665
OGLUM06G23260 Oryza glumaepatula OGLUM06G23260 I 0.664
LPERR06G18380 Leersia perrieri LPERR06G18380 I 0.664
OMERI06G22090 Oryza meridionalis OMERI06G22090 I 0.664
ORUFI06G23790 Oryza rufipogon ORUFI06G23790 I 0.664
OS06G0637500 Oryza sativa OS06G0637500 I 0.664
BGIOSGA020819 Oryza indica BGIOSGA020819 I 0.664
ONIVA06G26080 Oryza nivara ONIVA06G26080 I 0.664
ORGLA06G0184100 Oryza glaberrima ORGLA06G0184100 I 0.664
OPUNC06G19910 Oryza punctata OPUNC06G19910 I 0.664
BRADI2G28910 Brachypodium distachyon BRADI2G28910 N 0.663
Bo4g025810 Brassica oleracea Bo4g025810 I 0.662