CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene20888-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene20888-v1.0-hybrid
T287350_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.726
0.806
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.705
0.731
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.673
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna20888.1-v1.0-hybrid
Myb
34
80
RGSWSPKEDELLTRLVTQFGARNWSVIARGIPGRSGKSCRLRWCNQL
mrna20888.1-v1.0-hybrid
Myb
86
131
RKPFSDEEDRIIVAAHATHGNRWSIIAKLLPGRTDNAIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
202 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA14G06870
Glycine max
GLYMA14G06870
I
0.791
Ciclev10031463m.g
Citrus clementina
Ciclev10031463m.g
I
0.779
orange1.1g012494m.g
Citrus sinensis
orange1.1g012494m.g
I
0.779
MTR_4g019370
Medicago truncatula
MTR_4g019370
I
0.778
evm.TU.supercontig_19.238
Carica papaya
evm.TU.supercontig_19.238
I
0.777
Eucgr.J00250
Eucalyptus grandis
Eucgr.J00250
I
0.774
chr2.LjT13M01.180.nd
Lotus japonicus
chr2.LjT13M01.180.nd
I
0.772
MDP0000284922
Malus domestica
MDP0000284922
I
0.769
TCM_042629
Theobroma cacao
TCM_042629
I
0.769
Gorai.011G278500
Gossypium raimondii
Gorai.011G278500
I
0.769
GLYMA02G42030
Glycine max
GLYMA02G42030
I
0.765
PGSC0003DMG400020338
Solanum tuberosum
PGSC0003DMG400020338
I
0.765
Solyc09g011780.2
Solanum lycopersicum
Solyc09g011780.2
I
0.765
cassava1242.valid.m1
Manihot esculenta
cassava1242.valid.m1
I
0.759
mgf015566m
Mimulus guttatus
mgf015566m
I
0.753
Pm018862
Prunus mume
Pm018862
I
0.752
Lus10028250.g
Linum usitatissimum
Lus10028250.g
I
0.751
Lus10040239.g
Linum usitatissimum
Lus10040239.g
I
0.751
Cla018417
Citrullus lanatus
Cla018417
I
0.748
Cucsa.066910
Cucumis sativus
Cucsa.066910
I
0.748
MDP0000807341
Malus domestica
MDP0000807341
I
0.746
GSMUA_Achr6G33470_001
Musa acuminata
GSMUA_Achr6G33470_001
I
0.745
27798.m000612
Ricinus communis
27798.m000612
I
0.745
mgf018580m
Mimulus guttatus
mgf018580m
I
0.743
Solyc05g052850.2
Solanum lycopersicum
Solyc05g052850.2
I
0.739
PGSC0003DMG400027190
Solanum tuberosum
PGSC0003DMG400027190
I
0.739
Pavir.J13677
Panicum virgatum
Pavir.J13677
I
0.736
GRMZM2G169316
Zea mays
GRMZM2G169316
I
0.736
Si001686m.g
Setaria italica
Si001686m.g
I
0.736
Pavir.Ea03398
Panicum virgatum
Pavir.Ea03398
I
0.736
Sb03g039950
Sorghum bicolor
Sb03g039950
I
0.736
orange1.1g017566m.g
Citrus sinensis
orange1.1g017566m.g
I
0.732
Ciclev10012003m.g
Citrus clementina
Ciclev10012003m.g
I
0.732
PK16550.1
Cannabis sativa
PK16550.1
I
0.729
GSMUA_Achr5G28780_001
Musa acuminata
GSMUA_Achr5G28780_001
I
0.728
SapurV1A.0709s0060
Salix purpurea
SapurV1A.0709s0060
I
0.728
VIT_08s0007g01540
Vitis vinifera
VIT_08s0007g01540
I
0.728
PK07741.1
Cannabis sativa
PK07741.1
D
0.726
SapurV1A.0262s0270
Salix purpurea
SapurV1A.0262s0270
I
0.725
chr2.CM0002.110.nc
Lotus japonicus
chr2.CM0002.110.nc
I
0.724
MDP0000203733
Malus domestica
MDP0000203733
I
0.724
MDP0000319124
Malus domestica
MDP0000319124
I
0.724
AtMYB1
Arabidopsis lyrata
scaffold_301043.1
I
0.724
GLYMA01G26650
Glycine max
GLYMA01G26650
I
0.724
GSMUA_Achr9G03720_001
Musa acuminata
GSMUA_Achr9G03720_001
I
0.723
Gorai.006G179700
Gossypium raimondii
Gorai.006G179700
I
0.721
PK12959.1
Cannabis sativa
PK12959.1
I
0.719
e_gw1.72.10.1
Physcomitrella patens
e_gw1.72.10.1
I
0.717
e_gw1.53.214.1
Physcomitrella patens
e_gw1.53.214.1
I
0.717
GLYMA03G15810
Glycine max
GLYMA03G15810
I
0.715
cassava7558.valid.m1
Manihot esculenta
cassava7558.valid.m1
I
0.715
SELMODRAFT_77255
Selaginella moellendorffii
SELMODRAFT_77255
I
0.714
SELMODRAFT_113522
Selaginella moellendorffii
SELMODRAFT_113522
I
0.714
AMTR_s00007p00169630
Amborella trichopoda
AMTR_s00007p00169630
I
0.713
Pm002576
Prunus mume
Pm002576
I
0.712
MTR_5g082910
Medicago truncatula
MTR_5g082910
I
0.712
TCM_021796
Theobroma cacao
TCM_021796
I
0.712
MDP0000298689
Malus domestica
MDP0000298689
I
0.712
PRUPE_ppa006851mg
Prunus persica
PRUPE_ppa006851mg
I
0.712
orange1.1g046570m.g
Citrus sinensis
orange1.1g046570m.g
I
0.711
29801.m003096
Ricinus communis
29801.m003096
I
0.711
Ciclev10032317m.g
Citrus clementina
Ciclev10032317m.g
I
0.711
MDP0000478512
Malus domestica
MDP0000478512
I
0.710
gene18756-v1.0-hybrid
Fragaria vesca
gene18756-v1.0-hybrid
I
0.708
Pm018951
Prunus mume
Pm018951
I
0.707
PRUPE_ppa017892mg
Prunus persica
PRUPE_ppa017892mg
I
0.707
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.707
Aquca_009_00809
Aquilegia coerulea
Aquca_009_00809
I
0.706
OS02G0187700
Oryza sativa
OS02G0187700
D
0.705
Cla004431
Citrullus lanatus
Cla004431
I
0.705
Pavir.J23512
Panicum virgatum
Pavir.J23512
I
0.705
Sb04g005940
Sorghum bicolor
Sb04g005940
I
0.705
Pavir.Ab00649
Panicum virgatum
Pavir.Ab00649
I
0.705
Si017917m.g
Setaria italica
Si017917m.g
I
0.705
Eucgr.E02958
Eucalyptus grandis
Eucgr.E02958
I
0.705
ORGLA02G0061500
Oryza glaberrima
ORGLA02G0061500
I
0.705
ONIVA02G08210
Oryza nivara
ONIVA02G08210
I
0.705
OGLUM02G06640
Oryza glumaepatula
OGLUM02G06640
I
0.705
OMERI02G07700
Oryza meridionalis
OMERI02G07700
I
0.705
GRMZM2G145444
Zea mays
GRMZM2G145444
I
0.705
LPERR02G05810
Leersia perrieri
LPERR02G05810
I
0.705
GLYMA14G06320
Glycine max
GLYMA14G06320
I
0.705
OPUNC02G05820
Oryza punctata
OPUNC02G05820
I
0.705
ORUFI02G06760
Oryza rufipogon
ORUFI02G06760
I
0.705
BRADI3G06470
Brachypodium distachyon
BRADI3G06470
I
0.705
MLOC_7426
Hordeum vulgare
MLOC_7426
I
0.705
Cagra.0003s0013
Capsella grandiflora
Cagra.0003s0013
I
0.702
Carubv10017397m.g
Capsella rubella
Carubv10017397m.g
I
0.702
MYB109
Arabidopsis lyrata
fgenesh2_kg.5__1999__AT3G55730.1
I
0.702
Eucgr.K03010
Eucalyptus grandis
Eucgr.K03010
I
0.701
MYB25
Arabidopsis lyrata
Al_scaffold_0004_2572
I
0.701
orange1.1g040502m.g
Citrus sinensis
orange1.1g040502m.g
I
0.699
Ciclev10029124m.g
Citrus clementina
Ciclev10029124m.g
I
0.699
29814.m000736
Ricinus communis
29814.m000736
I
0.698
POPTR_0008s07100
Populus trichocarpa
POPTR_0008s07100
I
0.698
cassava41257.m1
Manihot esculenta
cassava41257.m1
I
0.698
Gorai.012G149000
Gossypium raimondii
Gorai.012G149000
I
0.696
TRAES3BF039800050CFD_g
Triticum aestivum
TRAES3BF039800050CFD_g
I
0.695
MLOC_10322
Hordeum vulgare
MLOC_10322
I
0.695
gw1.10.6.1
Physcomitrella patens
gw1.10.6.1
I
0.694
VIT_13s0019g03200
Vitis vinifera
VIT_13s0019g03200
I
0.694
Thhalv10021963m.g
Eutrema salsugineum
Thhalv10021963m.g
I
0.694
Cucsa.368410
Cucumis sativus
Cucsa.368410
I
0.693
Lus10028979.g
Linum usitatissimum
Lus10028979.g
I
0.693
Lus10007503.g
Linum usitatissimum
Lus10007503.g
I
0.693
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.693
gene26289-v1.0-hybrid
Fragaria vesca
gene26289-v1.0-hybrid
I
0.692
Cla013306
Citrullus lanatus
Cla013306
I
0.691
Lus10040940.g
Linum usitatissimum
Lus10040940.g
I
0.690
GRMZM2G078820
Zea mays
GRMZM2G078820
I
0.688
LPERR01G32110
Leersia perrieri
LPERR01G32110
I
0.688
OMERI01G34370
Oryza meridionalis
OMERI01G34370
I
0.688
ONIVA01G42300
Oryza nivara
ONIVA01G42300
I
0.688
OPUNC01G36300
Oryza punctata
OPUNC01G36300
I
0.688
ORGLA01G0312200
Oryza glaberrima
ORGLA01G0312200
I
0.688
ORUFI01G40770
Oryza rufipogon
ORUFI01G40770
I
0.688
OB01G46120
Oryza brachyantha
OB01G46120
I
0.688
OS01G0850400
Oryza sativa
OS01G0850400
I
0.688
OBART01G37390
Oryza barthii
OBART01G37390
I
0.688
OLONG_001357
Oryza longistaminata
OLONG_001357
I
0.688
OGLUM01G41330
Oryza glumaepatula
OGLUM01G41330
I
0.688
BGIOSGA000485
Oryza indica
BGIOSGA000485
I
0.688
Gorai.012G078200
Gossypium raimondii
Gorai.012G078200
I
0.686
Cagra.2515s0014
Capsella grandiflora
Cagra.2515s0014
I
0.685
Ca_12468
Cicer arietinum
Ca_12468
I
0.685
PK01153.1
Cannabis sativa
PK01153.1
I
0.685
Carubv10013882m.g
Capsella rubella
Carubv10013882m.g
I
0.685
GLYMA02G43280
Glycine max
GLYMA02G43280
I
0.685
MTR_3g101290
Medicago truncatula
MTR_3g101290
I
0.683
SapurV1A.0525s0230
Salix purpurea
SapurV1A.0525s0230
I
0.683
MYB25
Arabidopsis thaliana
AT2G39880
I
0.681
Lus10014103.g
Linum usitatissimum
Lus10014103.g
I
0.681
mgf025567m
Mimulus guttatus
mgf025567m
I
0.681
Bo3g062160
Brassica oleracea
Bo3g062160
I
0.680
Sb0088s002210
Sorghum bicolor
Sb0088s002210
N
0.680
PRUPE_ppa023154mg
Prunus persica
PRUPE_ppa023154mg
I
0.679
GRMZM2G050550
Zea mays
GRMZM2G050550
I
0.679
SapurV1A.0650s0070
Salix purpurea
SapurV1A.0650s0070
I
0.679
Sb02g013010
Sorghum bicolor
Sb02g013010
I
0.679
Pm021211
Prunus mume
Pm021211
I
0.679
Si032789m.g
Setaria italica
Si032789m.g
I
0.679
Pavir.Ba03084
Panicum virgatum
Pavir.Ba03084
I
0.679
Pavir.Db00693
Panicum virgatum
Pavir.Db00693
I
0.678
Pavir.Da00404
Panicum virgatum
Pavir.Da00404
I
0.678
Si006938m.g
Setaria italica
Si006938m.g
I
0.678
GRMZM5G803308
Zea mays
GRMZM5G803308
I
0.678
Sb10g024950
Sorghum bicolor
Sb10g024950
I
0.678
Thhalv10010431m.g
Eutrema salsugineum
Thhalv10010431m.g
I
0.677
Bra007186
Brassica rapa
Bra007186
I
0.677
Bostr.20505s0177
Boechera stricta
Bostr.20505s0177
I
0.677
Bostr.23794s0078
Boechera stricta
Bostr.23794s0078
I
0.676
TCM_042474
Theobroma cacao
TCM_042474
I
0.676
OB09G10200
Oryza brachyantha
OB09G10200
I
0.675
OPUNC12G06260
Oryza punctata
OPUNC12G06260
I
0.675
ORGLA09G0002900
Oryza glaberrima
ORGLA09G0002900
I
0.675
BRADI4G08220
Brachypodium distachyon
BRADI4G08220
I
0.675
ONIVA09G00250
Oryza nivara
ONIVA09G00250
I
0.675
OGLUM09G00340
Oryza glumaepatula
OGLUM09G00340
I
0.675
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.675
OMERI08G05160
Oryza meridionalis
OMERI08G05160
I
0.675
OBART09G00310
Oryza barthii
OBART09G00310
I
0.675
ORUFI09G00360
Oryza rufipogon
ORUFI09G00360
I
0.675
SELMODRAFT_99462
Selaginella moellendorffii
SELMODRAFT_99462
I
0.675
OS09G0106700
Oryza sativa
OS09G0106700
I
0.675
SELMODRAFT_103999
Selaginella moellendorffii
SELMODRAFT_103999
I
0.675
BGIOSGA030245
Oryza indica
BGIOSGA030245
I
0.675
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.675
GRMZM2G087955
Zea mays
GRMZM2G087955
I
0.674
Cucsa.244650
Cucumis sativus
Cucsa.244650
I
0.673
MYB1
Arabidopsis thaliana
AT3G09230
D
0.673
mgf020432m
Mimulus guttatus
mgf020432m
I
0.673
BRADI2G55040
Brachypodium distachyon
BRADI2G55040
I
0.672
Aquca_007_00580
Aquilegia coerulea
Aquca_007_00580
I
0.670
VIT_03s0180g00210
Vitis vinifera
VIT_03s0180g00210
I
0.670
VIT_18s0001g11170
Vitis vinifera
VIT_18s0001g11170
I
0.669
evm.TU.supercontig_56.79
Carica papaya
evm.TU.supercontig_56.79
I
0.668
Bo8g090160
Brassica oleracea
Bo8g090160
I
0.668
gene21001-v1.0-hybrid
Fragaria vesca
gene21001-v1.0-hybrid
I
0.668
Bra005006
Brassica rapa
Bra005006
I
0.667
Thhalv10016794m.g
Eutrema salsugineum
Thhalv10016794m.g
I
0.666
Traes_5BL_486D0D865
Triticum aestivum
Traes_5BL_486D0D865
I
0.666
Traes_4BL_545A5716E
Triticum aestivum
Traes_4BL_545A5716E
I
0.666
LPERR09G00910
Leersia perrieri
LPERR09G00910
I
0.666
Gorai.002G009300
Gossypium raimondii
Gorai.002G009300
I
0.666
MLOC_64817
Hordeum vulgare
MLOC_64817
I
0.666
Traes_4DL_D41CB81EA
Triticum aestivum
Traes_4DL_D41CB81EA
I
0.666
Traes_5DL_92CBBE968
Triticum aestivum
Traes_5DL_92CBBE968
I
0.666
cassava8939.m1
Manihot esculenta
cassava8939.m1
I
0.666
MYB109
Arabidopsis thaliana
AT3G55730
I
0.666
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.665
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.665
OGLUM06G23260
Oryza glumaepatula
OGLUM06G23260
I
0.664
LPERR06G18380
Leersia perrieri
LPERR06G18380
I
0.664
OMERI06G22090
Oryza meridionalis
OMERI06G22090
I
0.664
ORUFI06G23790
Oryza rufipogon
ORUFI06G23790
I
0.664
OS06G0637500
Oryza sativa
OS06G0637500
I
0.664
BGIOSGA020819
Oryza indica
BGIOSGA020819
I
0.664
ONIVA06G26080
Oryza nivara
ONIVA06G26080
I
0.664
ORGLA06G0184100
Oryza glaberrima
ORGLA06G0184100
I
0.664
OPUNC06G19910
Oryza punctata
OPUNC06G19910
I
0.664
BRADI2G28910
Brachypodium distachyon
BRADI2G28910
N
0.663
Bo4g025810
Brassica oleracea
Bo4g025810
I
0.662