Gorai.001G028200 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.001G028200 T287447_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.782 0.921
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.777 0.906
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.759 0.871
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.759 0.871
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.732 0.842
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.706 0.842
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G028200.1 Myb 39 85
Gorai.001G028200.1 Myb 91 137
Gorai.001G028200.1 Myb 143 187
Gorai.001G028200.2 Myb 39 85
Gorai.001G028200.2 Myb 91 137
Gorai.001G028200.2 Myb 143 187

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.821
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.817
TCM_047091 Theobroma cacao TCM_047091 I 0.817
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.815
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.812
MDP0000179225 Malus domestica MDP0000179225 I 0.811
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.808
MDP0000295807 Malus domestica MDP0000295807 I 0.804
Cla023357 Citrullus lanatus Cla023357 I 0.801
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.801
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.801
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.800
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.799
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.799
Cla022565 Citrullus lanatus Cla022565 I 0.799
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.799
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.796
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.795
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.792
29794.m003447 Ricinus communis 29794.m003447 I 0.788
Pm005124 Prunus mume Pm005124 I 0.787
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.785
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.782
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.782
mgf008601m Mimulus guttatus mgf008601m I 0.780
Ca_14925 Cicer arietinum Ca_14925 I 0.777
PK12011.1 Cannabis sativa PK12011.1 D 0.777
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.777
Ca_01884 Cicer arietinum Ca_01884 I 0.776
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.773
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.773
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.772
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.771
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.767
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.767
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.759
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.759
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.759
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.759
Bra011376 Brassica rapa Bra011376 I 0.755
Bo1g010040 Brassica oleracea Bo1g010040 I 0.755
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.748
Bo3g171130 Brassica oleracea Bo3g171130 I 0.748
Bra034531 Brassica rapa Bra034531 I 0.748
Bo3g179620 Brassica oleracea Bo3g179620 I 0.744
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.744
Bo3g007070 Brassica oleracea Bo3g007070 I 0.744
Bo7g115810 Brassica oleracea Bo7g115810 I 0.742
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.741
PK22174.1 Cannabis sativa PK22174.1 I 0.741
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.741
OB12G16480 Oryza brachyantha OB12G16480 I 0.735
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.735
OS12G0238000 Oryza sativa OS12G0238000 I 0.735
Bra006102 Brassica rapa Bra006102 I 0.734
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.732
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.732
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.732
Bra008956 Brassica rapa Bra008956 I 0.730
Bo9g171130 Brassica oleracea Bo9g171130 I 0.730
OB01G18340 Oryza brachyantha OB01G18340 I 0.724
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.722
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.722
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.720
OBART01G08110 Oryza barthii OBART01G08110 I 0.720
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.720
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.720
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.719
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.717
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.716
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.716
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.716
mgf006384m Mimulus guttatus mgf006384m I 0.713
Bra037045 Brassica rapa Bra037045 I 0.712
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.712
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.712
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.706
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.705
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.704
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.704
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.704
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.703
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.702
F775_05724 Aegilops tauschii F775_05724 I 0.702
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.702
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.702
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.700
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.697
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.696
Si000842m.g Setaria italica Si000842m.g I 0.696
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.696
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.695
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.693
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.691
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.691
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.688
Cla018173 Citrullus lanatus Cla018173 I 0.685
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.683
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.683
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.682
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.680
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.679
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.679
MYB3R-2 Oryza sativa OS01G0841500 I 0.679
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.679
Bo1g144510 Brassica oleracea Bo1g144510 I 0.676
Bra034067 Brassica rapa Bra034067 I 0.676
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.676
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.675
TTHERM_00842380 Tetrahymena thermophila TTHERM_00842380 N 0.674
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.673
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.671
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.666
Pm002704 Prunus mume Pm002704 I 0.666
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.666
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.665
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.665
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.662