CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.001G169700
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.001G169700
T287470_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.829
0.871
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.729
0.731
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.729
0.731
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.723
0.731
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.723
0.731
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.695
0.731
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.695
0.731
MYB106
M11040_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.692
0.753
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD
HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.678
0.720
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.678
0.720
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.678
0.720
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.667
0.710
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.001G169700.1
Myb
14
44
KGPWGPEEDEILINYINKHGHGSWRSLPKLS
Gorai.001G169700.1
Myb
62
85
GLISTLTGLRRCGKSCRLRWTNYL
Gorai.001G169700.1
Myb
91
136
RGPFTLDEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHL
Gorai.001G169700.2
Myb
14
61
KGPWGPEEDEILINYINKHGHGSWRSLPKLSGLRRCGKSCRLRWTNYL
Gorai.001G169700.2
Myb
67
112
RGPFTLDEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHL
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
600 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy