Gorai.002G016800 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.002G016800 T287484_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH

DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.666 0.720
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN

NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.666 0.720
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH

DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.661 0.656
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH

DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.661 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G016800.1 Myb 14 61
Gorai.002G016800.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_007865 Theobroma cacao TCM_007865 I 0.857
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.850
Lus10039735.g Linum usitatissimum Lus10039735.g I 0.849
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I 0.848
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N 0.840
MDP0000155426 Malus domestica MDP0000155426 I 0.833
PK24260.1 Cannabis sativa PK24260.1 N 0.824
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.824
MDP0000407613 Malus domestica MDP0000407613 N 0.813
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.812
Pm015302 Prunus mume Pm015302 N 0.812
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.807
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.803
cassava26894.m1 Manihot esculenta cassava26894.m1 N 0.784
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.780
Lus10031607.g Linum usitatissimum Lus10031607.g N 0.777
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.773
Ca_22597 Cicer arietinum Ca_22597 N 0.772
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N 0.771
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.762
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.761
GLYMA06G45547 Glycine max GLYMA06G45547 N 0.760
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.758
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.758
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N 0.758
MTR_2g089450 Medicago truncatula MTR_2g089450 N 0.753
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I 0.748
GLYMA12G11340 Glycine max GLYMA12G11340 N 0.746
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.744
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N 0.743
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.741
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N 0.739
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.733
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.729
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.729
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.727
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.724
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.720
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.720
GLYMA12G32541 Glycine max GLYMA12G32541 N 0.720
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N 0.719
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.719
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.716
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.716
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.714
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.713
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.713
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.713
MDP0000131822 Malus domestica MDP0000131822 I 0.712
Lus10018547.g Linum usitatissimum Lus10018547.g N 0.711
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.709
TCM_030020 Theobroma cacao TCM_030020 I 0.705
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I 0.705
Lus10039772.g Linum usitatissimum Lus10039772.g N 0.705
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.703
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.701
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N 0.701
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.701
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.700
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.699
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.696
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N 0.693
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.692
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.692
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I 0.691
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.690
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.690
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.689
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.689
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.688
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.688
GLYMA06G45570 Glycine max GLYMA06G45570 I 0.687
MDP0000289283 Malus domestica MDP0000289283 I 0.686
Lus10039771.g Linum usitatissimum Lus10039771.g N 0.686
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.684
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.684
Pm009880 Prunus mume Pm009880 N 0.683
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.683
TCM_007868 Theobroma cacao TCM_007868 I 0.683
PK29337.1 Cannabis sativa PK29337.1 I 0.682
Bo5g007320 Brassica oleracea Bo5g007320 I 0.679
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.679
Bra015481 Brassica rapa Bra015481 I 0.679
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.678
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.678
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.678
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.678
Lus10018546.g Linum usitatissimum Lus10018546.g N 0.676
PGSC0003DMG400026176 Solanum tuberosum PGSC0003DMG400026176 N 0.675
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.675
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I 0.674
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I 0.674
Lus10018545.g Linum usitatissimum Lus10018545.g N 0.674
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.673
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.673
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.672
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.672
PRUPE_ppa015081mg Prunus persica PRUPE_ppa015081mg N 0.672
TCM_026197 Theobroma cacao TCM_026197 I 0.672
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.670
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.670
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.670
Bo8g105490 Brassica oleracea Bo8g105490 I 0.670
Bra026720 Brassica rapa Bra026720 I 0.670
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.670
MYB14 Arabidopsis thaliana AT2G31180 I 0.669
Gorai.013G143000 Gossypium raimondii Gorai.013G143000 N 0.669
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.669
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.668
OS10G0478300 Oryza sativa OS10G0478300 I 0.667
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.667
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.667
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.666
POPTR_0011s04010 Populus trichocarpa POPTR_0011s04010 N 0.666
Cla006077 Citrullus lanatus Cla006077 I 0.666
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.666
PK20358.1 Cannabis sativa PK20358.1 I 0.666
GSMUA_Achr8G14540_001 Musa acuminata GSMUA_Achr8G14540_001 N 0.666
ONIVA04G17140 Oryza nivara ONIVA04G17140 I 0.665
TCM_033016 Theobroma cacao TCM_033016 N 0.665
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I 0.665
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I 0.665
cassava5261.m1 Manihot esculenta cassava5261.m1 N 0.664
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.664
GLYMA03G41100 Glycine max GLYMA03G41100 I 0.664
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.664
Eucgr.L02563 Eucalyptus grandis Eucgr.L02563 N 0.663
29933.m001454 Ricinus communis 29933.m001454 N 0.663
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.662
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.662
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.662
POPTR_0004s02570 Populus trichocarpa POPTR_0004s02570 I 0.662
MYB58 Arabidopsis thaliana AT1G16490 D 0.661
Gorai.013G143200 Gossypium raimondii Gorai.013G143200 I 0.661
GRMZM2G127857 Zea mays GRMZM2G127857 I 0.661